Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
---|---|
Accession | NC_012721 |
Length | 2,827,333 |
Click here to switch to the map view.
The map label for this gene is 238024998
Identifier: 238024998
GI number: 238024998
Start: 2080255
End: 2081325
Strand: Reverse
Name: 238024998
Synonym: bglu_2g16550
Alternate gene names: NA
Gene position: 2081325-2080255 (Counterclockwise)
Preceding gene: 238025002
Following gene: 238024996
Centisome position: 73.61
GC content: 73.11
Gene sequence:
>1071_bases ATGTTCTTCGATGAGCTGAGCGATGAAGAATGGACACGCGTGTCGACACTGATCGCGGACGAGCCCATCCGGCTTAACCG TCGTGGTCGCCCGCGCGCGGAAACGCGCGTGGTGGCGAACGCGATACTCTGGATTCTGACCACCGGCGAGCCCTGGTCCA AGCTGCCCGGCCGCTATCCGTCTGGGCCCACCTGCCGCCGCCGTTTCGAGGAGTGGCTCGCCAGCGGCACGCTCGGCGAG ATGGTGGCGATGCTCAGCGAGATGAGCGGCCGCAGCTTCGCCTATGTGCCGCCGCCGCCCGAACTGGCCGCGCCGGCCCC GTGCCCCGAGCCGGCCGCGAACCATGACCGGCTGCGCGGCGTGTTCTGGCAGAACCCCGAGTCGTGGCGCCTGCCGGTGG CCGACGCCGCCGACTGGCACGACGCGGACGACGTGGACGACGGCGGCGGTGCGGGGCGCCGCGTGGTTCACGACACGCCG TCGGTGGCCGAGGCCGTGCCGATGGTGCAGGCCGTCGCGGGCCAGGCCCACGCCGCCCGGGCGCTGGCGGCAGCGAGCGG GGGCGAGATCGACGCCCAGGCCGATCTCGCCGATCACGTGCGGCCCATGTCGGTCCGCTTCGCCACCGTCGCGCCGCAAT CGGAGTCGTACCGCGGCTACACGCTGTACGGCACCGCACAGCCGGTGCAGAACATGATGTACCGCGCCTGGGCCGAGATC GCCTGCGGCGGCCGCCGCATCGAGCGTTCGGGACTGATCGGCCCGCGCTTCTCGGACCCGGAGGCGGCCGAGCGTCACGC GATCGCCTGGGGGCGCGAGTGGGTCGACCAGCACCTGGCGGCCGAGGCCGAGGCCCACGACGAGGCGTCGGCCGCAGCCG TGGCGCAGGCGCTGCCGCCGCAGATGCGCGTGATGCGTCCGGCCAGCGCGGTGCTCGCGACGCTGCCGTCGATGGCGGCC GATCGCCAGGTGGCACGGCACCTGAGCGGCGAGCGCCGCCTCGACCTGGCCGATGGCGCGGCGCGTGCGCACGAGCTTGC GCATCGCGAATTCGCCTATCAGGTCGGTTAG
Upstream 100 bases:
>100_bases TATTCGTCCAATGTGCAACCTGGCCGTGATCGCGCATCCCACATGCCCGATCACGTCGCCCCGATCGCAGCCCCGGCCTG GCTGCGTTGTGGAGATATCT
Downstream 100 bases:
>100_bases GAAGCCTGACGAGACCGTTCACGGATGCAGGGTCGTTTCACCCGGCCTCGGCGCCGGCGCCTTCGGGCCGCCGGCGCTTT TTTTGATTTTTTCCCGAGCG
Product: transposase
Products: NA
Alternate protein names: Transposase Protein; Transposase; IS5 Family Transposase OrfA
Number of amino acids: Translated: 356; Mature: 356
Protein sequence:
>356_residues MFFDELSDEEWTRVSTLIADEPIRLNRRGRPRAETRVVANAILWILTTGEPWSKLPGRYPSGPTCRRRFEEWLASGTLGE MVAMLSEMSGRSFAYVPPPPELAAPAPCPEPAANHDRLRGVFWQNPESWRLPVADAADWHDADDVDDGGGAGRRVVHDTP SVAEAVPMVQAVAGQAHAARALAAASGGEIDAQADLADHVRPMSVRFATVAPQSESYRGYTLYGTAQPVQNMMYRAWAEI ACGGRRIERSGLIGPRFSDPEAAERHAIAWGREWVDQHLAAEAEAHDEASAAAVAQALPPQMRVMRPASAVLATLPSMAA DRQVARHLSGERRLDLADGAARAHELAHREFAYQVG
Sequences:
>Translated_356_residues MFFDELSDEEWTRVSTLIADEPIRLNRRGRPRAETRVVANAILWILTTGEPWSKLPGRYPSGPTCRRRFEEWLASGTLGE MVAMLSEMSGRSFAYVPPPPELAAPAPCPEPAANHDRLRGVFWQNPESWRLPVADAADWHDADDVDDGGGAGRRVVHDTP SVAEAVPMVQAVAGQAHAARALAAASGGEIDAQADLADHVRPMSVRFATVAPQSESYRGYTLYGTAQPVQNMMYRAWAEI ACGGRRIERSGLIGPRFSDPEAAERHAIAWGREWVDQHLAAEAEAHDEASAAAVAQALPPQMRVMRPASAVLATLPSMAA DRQVARHLSGERRLDLADGAARAHELAHREFAYQVG >Mature_356_residues MFFDELSDEEWTRVSTLIADEPIRLNRRGRPRAETRVVANAILWILTTGEPWSKLPGRYPSGPTCRRRFEEWLASGTLGE MVAMLSEMSGRSFAYVPPPPELAAPAPCPEPAANHDRLRGVFWQNPESWRLPVADAADWHDADDVDDGGGAGRRVVHDTP SVAEAVPMVQAVAGQAHAARALAAASGGEIDAQADLADHVRPMSVRFATVAPQSESYRGYTLYGTAQPVQNMMYRAWAEI ACGGRRIERSGLIGPRFSDPEAAERHAIAWGREWVDQHLAAEAEAHDEASAAAVAQALPPQMRVMRPASAVLATLPSMAA DRQVARHLSGERRLDLADGAARAHELAHREFAYQVG
Specific function: Unknown
COG id: COG3293
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38818; Mature: 38818
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFFDELSDEEWTRVSTLIADEPIRLNRRGRPRAETRVVANAILWILTTGEPWSKLPGRYP CCCCCCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHEEEEEEECCCCHHHCCCCCC SGPTCRRRFEEWLASGTLGEMVAMLSEMSGRSFAYVPPPPELAAPAPCPEPAANHDRLRG CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHCC VFWQNPESWRLPVADAADWHDADDVDDGGGAGRRVVHDTPSVAEAVPMVQAVAGQAHAAR EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCHHHHHH ALAAASGGEIDAQADLADHVRPMSVRFATVAPQSESYRGYTLYGTAQPVQNMMYRAWAEI HHHHCCCCCCCCCCCHHHCCCCCEEEEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHH ACGGRRIERSGLIGPRFSDPEAAERHAIAWGREWVDQHLAAEAEAHDEASAAAVAQALPP HCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH QMRVMRPASAVLATLPSMAADRQVARHLSGERRLDLADGAARAHELAHREFAYQVG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MFFDELSDEEWTRVSTLIADEPIRLNRRGRPRAETRVVANAILWILTTGEPWSKLPGRYP CCCCCCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHEEEEEEECCCCHHHCCCCCC SGPTCRRRFEEWLASGTLGEMVAMLSEMSGRSFAYVPPPPELAAPAPCPEPAANHDRLRG CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHCC VFWQNPESWRLPVADAADWHDADDVDDGGGAGRRVVHDTPSVAEAVPMVQAVAGQAHAAR EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCHHHHHH ALAAASGGEIDAQADLADHVRPMSVRFATVAPQSESYRGYTLYGTAQPVQNMMYRAWAEI HHHHCCCCCCCCCCCHHHCCCCCEEEEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHH ACGGRRIERSGLIGPRFSDPEAAERHAIAWGREWVDQHLAAEAEAHDEASAAAVAQALPP HCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH QMRVMRPASAVLATLPSMAADRQVARHLSGERRLDLADGAARAHELAHREFAYQVG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA