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The map label for this gene is yafC [H]

Identifier: 238024973

GI number: 238024973

Start: 2052788

End: 2053702

Strand: Direct

Name: yafC [H]

Synonym: bglu_2g16300

Alternate gene names: 238024973

Gene position: 2052788-2053702 (Clockwise)

Preceding gene: 238024971

Following gene: 238024974

Centisome position: 72.61

GC content: 69.51

Gene sequence:

>915_bases
ATGAAGACGTCGACCGAAGAGTTGCAGACCTTCGTCGCGATCATCGACAGCGGCTCGATCACGGCCGCCGCCGAGCAGCT
CGGGCAGACCGTGTCGGGCGTGAGCCGGGCGCTGAACCGCCTCGAACGCAAGCTCGGCGTGACGCTGCTGCGCCGCACGA
CGCGCAGCTCGCAGCTGACCGACGAGGGCGAACTGCTGCTGGCCCGCGCGCGCGAGATCCTGCAAGCGGTGGAGGAAGCG
GAGACGGCCGTCTCGCTCGGCCGCGTCGAGCCTGCCGGCAGGCTGCGCGTGGATGCGGCCACGCCGTTCATGCTGCATGC
GATCGTCCCGCGCCTGCCCGCGTTCACGGCGCGCTACCCCGACATCGCGCTCGAACTGTCCAACAACGAGCGGTTCATCG
ACCTGATCGAACAGCGCATCGACATCGCGATACGGATCGGCGCGCTGCCCGATTCGACGCTGCATGCGCGCCCGCTCGGT
TCGAGCCCGCTGCATGTGCTGGCGAGCCCCGCCTATCTGGCCGCCCACGGCACGCCGCGCAGCGTGGCCGATTTGGCCCG
CCACCGGCTGCTCGGCTTCAGTGATATCGAGACGCTGAACCGCTGGCCGCTGCACCTGCGCGCGGACGGCAGCGGCAACG
GCAGCGACGACGGCACGGGCCTGGCGATCACCCCCGCGCATACCGCCTCCAGCGGCGAGACGCTGCGGCATCTCGGACTC
GCGGGGATCGGCATCGTCTGCCTGTCCGGTTTCATGACGGCGGACGACATCGCCGCGGGGCGGCTCGTGCCGCTGCTCAC
CGAACTGATGACGGACTATCGGCAGCCCGTCAACGCCGTCTATTACCGGCATGCGGCACTGACGGGCCGCGTGCAGGGTT
TCCTCGATTTCCTGAGCCAGCATGTGCGGCTCTGA

Upstream 100 bases:

>100_bases
GGACTCCTGGTCCGATTGGTTCGATGGCTGCCAGTGTGAGGGCGGACGGAACGCGTAAAAACCGTGTTAGGCTCAAGTCA
TTCTTGAATCCGGGTCAATA

Downstream 100 bases:

>100_bases
ACCCGTGCCGACGCCCGCGCTGCCGCCGCTCTACCTGATCACGCCCGAGCCGGCCTCCAACGCGCGCGCCGATCTCGACG
CGTTCGTCTCTCGGCTCGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MKTSTEELQTFVAIIDSGSITAAAEQLGQTVSGVSRALNRLERKLGVTLLRRTTRSSQLTDEGELLLARAREILQAVEEA
ETAVSLGRVEPAGRLRVDAATPFMLHAIVPRLPAFTARYPDIALELSNNERFIDLIEQRIDIAIRIGALPDSTLHARPLG
SSPLHVLASPAYLAAHGTPRSVADLARHRLLGFSDIETLNRWPLHLRADGSGNGSDDGTGLAITPAHTASSGETLRHLGL
AGIGIVCLSGFMTADDIAAGRLVPLLTELMTDYRQPVNAVYYRHAALTGRVQGFLDFLSQHVRL

Sequences:

>Translated_304_residues
MKTSTEELQTFVAIIDSGSITAAAEQLGQTVSGVSRALNRLERKLGVTLLRRTTRSSQLTDEGELLLARAREILQAVEEA
ETAVSLGRVEPAGRLRVDAATPFMLHAIVPRLPAFTARYPDIALELSNNERFIDLIEQRIDIAIRIGALPDSTLHARPLG
SSPLHVLASPAYLAAHGTPRSVADLARHRLLGFSDIETLNRWPLHLRADGSGNGSDDGTGLAITPAHTASSGETLRHLGL
AGIGIVCLSGFMTADDIAAGRLVPLLTELMTDYRQPVNAVYYRHAALTGRVQGFLDFLSQHVRL
>Mature_304_residues
MKTSTEELQTFVAIIDSGSITAAAEQLGQTVSGVSRALNRLERKLGVTLLRRTTRSSQLTDEGELLLARAREILQAVEEA
ETAVSLGRVEPAGRLRVDAATPFMLHAIVPRLPAFTARYPDIALELSNNERFIDLIEQRIDIAIRIGALPDSTLHARPLG
SSPLHVLASPAYLAAHGTPRSVADLARHRLLGFSDIETLNRWPLHLRADGSGNGSDDGTGLAITPAHTASSGETLRHLGL
AGIGIVCLSGFMTADDIAAGRLVPLLTELMTDYRQPVNAVYYRHAALTGRVQGFLDFLSQHVRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=303, Percent_Identity=45.2145214521452, Blast_Score=269, Evalue=1e-73,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=32.2033898305085, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=30.8724832214765, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=29.4314381270903, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1789440, Length=298, Percent_Identity=29.8657718120805, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787128, Length=194, Percent_Identity=30.4123711340206, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787589, Length=201, Percent_Identity=29.3532338308458, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1789173, Length=291, Percent_Identity=26.8041237113402, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788481, Length=312, Percent_Identity=28.525641025641, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787879, Length=280, Percent_Identity=29.6428571428571, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1786448, Length=261, Percent_Identity=27.5862068965517, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1790262, Length=192, Percent_Identity=28.125, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788706, Length=311, Percent_Identity=25.08038585209, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=176, Percent_Identity=31.25, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786713, Length=199, Percent_Identity=30.1507537688442, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788297, Length=141, Percent_Identity=34.0425531914894, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788626, Length=182, Percent_Identity=29.6703296703297, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788748, Length=173, Percent_Identity=31.2138728323699, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32802; Mature: 32802

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSTEELQTFVAIIDSGSITAAAEQLGQTVSGVSRALNRLERKLGVTLLRRTTRSSQLT
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DEGELLLARAREILQAVEEAETAVSLGRVEPAGRLRVDAATPFMLHAIVPRLPAFTARYP
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHCCCCHHCCCC
DIALELSNNERFIDLIEQRIDIAIRIGALPDSTLHARPLGSSPLHVLASPAYLAAHGTPR
CEEEEECCCCHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCH
SVADLARHRLLGFSDIETLNRWPLHLRADGSGNGSDDGTGLAITPAHTASSGETLRHLGL
HHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCHHHHHHHH
AGIGIVCLSGFMTADDIAAGRLVPLLTELMTDYRQPVNAVYYRHAALTGRVQGFLDFLSQ
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
HVRL
HHCC
>Mature Secondary Structure
MKTSTEELQTFVAIIDSGSITAAAEQLGQTVSGVSRALNRLERKLGVTLLRRTTRSSQLT
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DEGELLLARAREILQAVEEAETAVSLGRVEPAGRLRVDAATPFMLHAIVPRLPAFTARYP
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHCCCCHHCCCC
DIALELSNNERFIDLIEQRIDIAIRIGALPDSTLHARPLGSSPLHVLASPAYLAAHGTPR
CEEEEECCCCHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCH
SVADLARHRLLGFSDIETLNRWPLHLRADGSGNGSDDGTGLAITPAHTASSGETLRHLGL
HHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCHHHHHHHH
AGIGIVCLSGFMTADDIAAGRLVPLLTELMTDYRQPVNAVYYRHAALTGRVQGFLDFLSQ
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
HVRL
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]