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The map label for this gene is ycaN [H]

Identifier: 238024732

GI number: 238024732

Start: 1756047

End: 1756952

Strand: Direct

Name: ycaN [H]

Synonym: bglu_2g13690

Alternate gene names: 238024732

Gene position: 1756047-1756952 (Clockwise)

Preceding gene: 238024731

Following gene: 238024737

Centisome position: 62.11

GC content: 71.74

Gene sequence:

>906_bases
ATGTTACGAGCCGGCCTGTCCGAACTGACGGCGTTCGTCGCGATCGCCGAGCAGCGCAGCTTTCGCGCGGCGGCGCGCGC
GCTGGCGGTCTCGCCGTCGGCGCTGAGCCACGCGATGCGCAGCCTGGAGGCGCGCCTCGGCGTGCGCCTGTTCAACCGCA
CCACGCGCTCGGTCGCGCTGACCGAGGCGGGCGAGCGCCTGCTGCACCGCGTGGGCCCGGCGCTGAGCGACCTCGAGAGC
GCCGTGGACGAAGTCTCCACCGCGCAGAACCGGCCGAGCGGCTCGGTCAGGATCAACGCGCCGGAGACTTCCGCGCGCCT
CCTGATCCGCCACGTGCTGCCCGACTTCCTGCTGCGCTATCCGGACATCCATGTCGAGTTCGTCACCGATACGCGGCTCA
TCGACATCGTCGCGGAAGGTTTCGATGCCGGCATCCGCGCGCTCGACGACGTGCCGCGCGACATGATCGCGGTGCGCTTC
GGCCCGGACATGCGCTTCATCGCCGTGGCCTCGCCCGCCTATCTGGCGCGCCATCCGGCCCCCGAGCGGCCCGCCGACCT
GATGCAGCACCGCTGCATCCGCCACCGCTTCGAAAGCGGCGCGCTGTTGCGCTGGGATTTCCAGCTCGACGGCAAGACCT
GCAGCCTCGACGTGAACGGGCCGCTGACGCTCGGCAACCCGAACGCGATGATCGAGGCCGCCCTGGCCGGCATCGGCGTG
GCCTGGGTGCCCGAGAGCCAGATCGAGGAACACCTGGCGAGCGGGCGGCTGATCGCGCTGCTCGACGCCTGGAGCGTGCC
GCTGCCGGGGCTCGCGCTCTATTACCCGGCCAACCGCCATCCGCCCGCGCCGCTACGCCTGTTCACGCAGGCGGTGCGCG
ACTGGGTGGCCGGCGGCGTGCGTTGA

Upstream 100 bases:

>100_bases
GCGCGATGCCGCCGTCGTGCAAGACAGCAGGCGGCCGCGGTGCTACGCTGCACGCGACAATCCGGTCGACTTGACGGGCA
CAATCGAGAAATCTTCATCC

Downstream 100 bases:

>100_bases
GCGCGCCGCCGCGCGCCGTCCGCGACGGCCGCCTTCAGGGCGCGACGAAGAACAGCCAGACGACGCAGACCATCCCGGCA
CACCAGACCAGCGTGCGCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MLRAGLSELTAFVAIAEQRSFRAAARALAVSPSALSHAMRSLEARLGVRLFNRTTRSVALTEAGERLLHRVGPALSDLES
AVDEVSTAQNRPSGSVRINAPETSARLLIRHVLPDFLLRYPDIHVEFVTDTRLIDIVAEGFDAGIRALDDVPRDMIAVRF
GPDMRFIAVASPAYLARHPAPERPADLMQHRCIRHRFESGALLRWDFQLDGKTCSLDVNGPLTLGNPNAMIEAALAGIGV
AWVPESQIEEHLASGRLIALLDAWSVPLPGLALYYPANRHPPAPLRLFTQAVRDWVAGGVR

Sequences:

>Translated_301_residues
MLRAGLSELTAFVAIAEQRSFRAAARALAVSPSALSHAMRSLEARLGVRLFNRTTRSVALTEAGERLLHRVGPALSDLES
AVDEVSTAQNRPSGSVRINAPETSARLLIRHVLPDFLLRYPDIHVEFVTDTRLIDIVAEGFDAGIRALDDVPRDMIAVRF
GPDMRFIAVASPAYLARHPAPERPADLMQHRCIRHRFESGALLRWDFQLDGKTCSLDVNGPLTLGNPNAMIEAALAGIGV
AWVPESQIEEHLASGRLIALLDAWSVPLPGLALYYPANRHPPAPLRLFTQAVRDWVAGGVR
>Mature_301_residues
MLRAGLSELTAFVAIAEQRSFRAAARALAVSPSALSHAMRSLEARLGVRLFNRTTRSVALTEAGERLLHRVGPALSDLES
AVDEVSTAQNRPSGSVRINAPETSARLLIRHVLPDFLLRYPDIHVEFVTDTRLIDIVAEGFDAGIRALDDVPRDMIAVRF
GPDMRFIAVASPAYLARHPAPERPADLMQHRCIRHRFESGALLRWDFQLDGKTCSLDVNGPLTLGNPNAMIEAALAGIGV
AWVPESQIEEHLASGRLIALLDAWSVPLPGLALYYPANRHPPAPLRLFTQAVRDWVAGGVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=41.0958904109589, Blast_Score=247, Evalue=6e-67,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=40.1360544217687, Blast_Score=220, Evalue=8e-59,
Organism=Escherichia coli, GI1786401, Length=311, Percent_Identity=31.8327974276527, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=30.952380952381, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=30.1369863013699, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1789440, Length=268, Percent_Identity=29.1044776119403, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789639, Length=282, Percent_Identity=30.8510638297872, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1788706, Length=258, Percent_Identity=28.2945736434109, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786448, Length=302, Percent_Identity=27.1523178807947, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788748, Length=143, Percent_Identity=36.3636363636364, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1790011, Length=269, Percent_Identity=24.5353159851301, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI157672245, Length=140, Percent_Identity=35, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI145693105, Length=226, Percent_Identity=27.8761061946903, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787601, Length=138, Percent_Identity=28.9855072463768, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789173, Length=259, Percent_Identity=27.027027027027, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790399, Length=147, Percent_Identity=31.2925170068027, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1787879, Length=146, Percent_Identity=34.2465753424658, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1790208, Length=126, Percent_Identity=36.5079365079365, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32933; Mature: 32933

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRAGLSELTAFVAIAEQRSFRAAARALAVSPSALSHAMRSLEARLGVRLFNRTTRSVAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEAGERLLHRVGPALSDLESAVDEVSTAQNRPSGSVRINAPETSARLLIRHVLPDFLLRY
HHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHC
PDIHVEFVTDTRLIDIVAEGFDAGIRALDDVPRDMIAVRFGPDMRFIAVASPAYLARHPA
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCEEEEEECCCHHHHCCCC
PERPADLMQHRCIRHRFESGALLRWDFQLDGKTCSLDVNGPLTLGNPNAMIEAALAGIGV
CCCHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEECCCCEEECCCHHHHHHHHHHCCE
AWVPESQIEEHLASGRLIALLDAWSVPLPGLALYYPANRHPPAPLRLFTQAVRDWVAGGV
EECCHHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
R
C
>Mature Secondary Structure
MLRAGLSELTAFVAIAEQRSFRAAARALAVSPSALSHAMRSLEARLGVRLFNRTTRSVAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEAGERLLHRVGPALSDLESAVDEVSTAQNRPSGSVRINAPETSARLLIRHVLPDFLLRY
HHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHC
PDIHVEFVTDTRLIDIVAEGFDAGIRALDDVPRDMIAVRFGPDMRFIAVASPAYLARHPA
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCEEEEEECCCHHHHCCCC
PERPADLMQHRCIRHRFESGALLRWDFQLDGKTCSLDVNGPLTLGNPNAMIEAALAGIGV
CCCHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEECCCCEEECCCHHHHHHHHHHCCE
AWVPESQIEEHLASGRLIALLDAWSVPLPGLALYYPANRHPPAPLRLFTQAVRDWVAGGV
EECCHHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]