Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is ahpC [H]
Identifier: 238024730
GI number: 238024730
Start: 1753282
End: 1753845
Strand: Direct
Name: ahpC [H]
Synonym: bglu_2g13670
Alternate gene names: 238024730
Gene position: 1753282-1753845 (Clockwise)
Preceding gene: 238024728
Following gene: 238024731
Centisome position: 62.01
GC content: 62.41
Gene sequence:
>564_bases ATGCCGATCATCAACAGCCAGATCAAACCGTTCAAGGCAACCGCATATCACAACGGCGACTTCGTTCCCGTCAGCGACGA ATCGCTGAAGGGCAAGTGGTCGGTCGTCGTGTTCTATCCGGCGGACTTCACGTTCGTGTGCCCGACGGAGCTGGGCGACC TGGCCGATCGTTACGAAGAATTCCAGAAGCTGGGCGTCGAGATCTACGGCGTGTCGACCGATACGCACTTCACGCACAAG GCATGGCACGACACCTCGGACACGATCGCGAAGATCAAGTACCCGCTGGTCGGCGACCCGACGGCCACGCTGGCACGCGC GTTCGACGTGCTGATCGAGGAAGAAGGCCTGGCGCTGCGCGGCACGTTCGTGATCAACCCGGAAGGCGAGATCAAGATCG CTGAAATCCACGACAACGGCATCGGCCGCGACGCAGGCGAACTGCTGCGCAAGGTGCAGGCCGCTCAATACGTCGCCTCG CACCCGGGTGAAGTCTGCCCCGCGAAGTGGACGCCGGGCGCCGAAACGCTGACCCCGTCGCTCGACCTGGTCGGCAAGAT CTAA
Upstream 100 bases:
>100_bases AAATCTCGATCCCCGTCATTGAAACAAGCAATTTCACATTCGCTCCCCCAATCGTCATACTGGCCGCTCCTGATCACTCA CTGACCAAAGGAAGACCCAA
Downstream 100 bases:
>100_bases GCGTCGTTCGCATCAGACGGACCGGGGCGCCGCGAGGCGCTCCGCCGTGCGGCCCTCGCGCCGCACGCCCCCTCGCCCGC CGGCGAGGTGCCAAAAACAT
Product: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
Products: NA
Alternate protein names: Alkyl hydroperoxide reductase protein C22; Peroxiredoxin; SCRP-23; Sulfate starvation-induced protein 8; SSI8; Thioredoxin peroxidase [H]
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MPIINSQIKPFKATAYHNGDFVPVSDESLKGKWSVVVFYPADFTFVCPTELGDLADRYEEFQKLGVEIYGVSTDTHFTHK AWHDTSDTIAKIKYPLVGDPTATLARAFDVLIEEEGLALRGTFVINPEGEIKIAEIHDNGIGRDAGELLRKVQAAQYVAS HPGEVCPAKWTPGAETLTPSLDLVGKI
Sequences:
>Translated_187_residues MPIINSQIKPFKATAYHNGDFVPVSDESLKGKWSVVVFYPADFTFVCPTELGDLADRYEEFQKLGVEIYGVSTDTHFTHK AWHDTSDTIAKIKYPLVGDPTATLARAFDVLIEEEGLALRGTFVINPEGEIKIAEIHDNGIGRDAGELLRKVQAAQYVAS HPGEVCPAKWTPGAETLTPSLDLVGKI >Mature_186_residues PIINSQIKPFKATAYHNGDFVPVSDESLKGKWSVVVFYPADFTFVCPTELGDLADRYEEFQKLGVEIYGVSTDTHFTHKA WHDTSDTIAKIKYPLVGDPTATLARAFDVLIEEEGLALRGTFVINPEGEIKIAEIHDNGIGRDAGELLRKVQAAQYVASH PGEVCPAKWTPGAETLTPSLDLVGKI
Specific function: Directly reduces organic hydroperoxides in its reduced dithiol form [H]
COG id: COG0450
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI32483377, Length=179, Percent_Identity=45.8100558659218, Blast_Score=161, Evalue=3e-40, Organism=Homo sapiens, GI5802974, Length=182, Percent_Identity=44.5054945054945, Blast_Score=160, Evalue=4e-40, Organism=Homo sapiens, GI32189392, Length=175, Percent_Identity=45.7142857142857, Blast_Score=156, Evalue=8e-39, Organism=Homo sapiens, GI4505591, Length=175, Percent_Identity=44.5714285714286, Blast_Score=154, Evalue=4e-38, Organism=Homo sapiens, GI32455266, Length=175, Percent_Identity=44.5714285714286, Blast_Score=154, Evalue=4e-38, Organism=Homo sapiens, GI32455264, Length=175, Percent_Identity=44.5714285714286, Blast_Score=154, Evalue=4e-38, Organism=Homo sapiens, GI5453549, Length=180, Percent_Identity=41.1111111111111, Blast_Score=141, Evalue=3e-34, Organism=Homo sapiens, GI33188454, Length=74, Percent_Identity=54.0540540540541, Blast_Score=88, Evalue=4e-18, Organism=Homo sapiens, GI4758638, Length=161, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=4e-12, Organism=Escherichia coli, GI1786822, Length=187, Percent_Identity=66.3101604278075, Blast_Score=275, Evalue=9e-76, Organism=Caenorhabditis elegans, GI193204376, Length=174, Percent_Identity=43.1034482758621, Blast_Score=151, Evalue=2e-37, Organism=Caenorhabditis elegans, GI32565831, Length=174, Percent_Identity=43.1034482758621, Blast_Score=151, Evalue=2e-37, Organism=Caenorhabditis elegans, GI17554494, Length=179, Percent_Identity=41.8994413407821, Blast_Score=150, Evalue=5e-37, Organism=Caenorhabditis elegans, GI25153706, Length=164, Percent_Identity=27.4390243902439, Blast_Score=71, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6320661, Length=181, Percent_Identity=39.2265193370166, Blast_Score=138, Evalue=4e-34, Organism=Saccharomyces cerevisiae, GI6323613, Length=182, Percent_Identity=39.5604395604396, Blast_Score=135, Evalue=4e-33, Organism=Saccharomyces cerevisiae, GI6319407, Length=163, Percent_Identity=31.2883435582822, Blast_Score=88, Evalue=7e-19, Organism=Drosophila melanogaster, GI17738015, Length=177, Percent_Identity=41.2429378531073, Blast_Score=156, Evalue=1e-38, Organism=Drosophila melanogaster, GI21357347, Length=191, Percent_Identity=41.3612565445026, Blast_Score=153, Evalue=6e-38, Organism=Drosophila melanogaster, GI24656348, Length=181, Percent_Identity=42.5414364640884, Blast_Score=152, Evalue=1e-37, Organism=Drosophila melanogaster, GI17864676, Length=181, Percent_Identity=42.5414364640884, Blast_Score=152, Evalue=1e-37, Organism=Drosophila melanogaster, GI17157991, Length=180, Percent_Identity=40.5555555555556, Blast_Score=143, Evalue=8e-35, Organism=Drosophila melanogaster, GI24641739, Length=180, Percent_Identity=40.5555555555556, Blast_Score=143, Evalue=8e-35, Organism=Drosophila melanogaster, GI17975518, Length=158, Percent_Identity=31.0126582278481, Blast_Score=88, Evalue=3e-18, Organism=Drosophila melanogaster, GI24652436, Length=158, Percent_Identity=31.0126582278481, Blast_Score=88, Evalue=4e-18, Organism=Drosophila melanogaster, GI24652434, Length=158, Percent_Identity=31.0126582278481, Blast_Score=87, Evalue=5e-18, Organism=Drosophila melanogaster, GI24581278, Length=158, Percent_Identity=31.0126582278481, Blast_Score=85, Evalue=2e-17,
Paralogues:
None
Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2250 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 6040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1580 Molecules/Cell In: Stationary-Phase
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017559 - InterPro: IPR019479 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF10417 1-cysPrx_C; PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 20516; Mature: 20385
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIINSQIKPFKATAYHNGDFVPVSDESLKGKWSVVVFYPADFTFVCPTELGDLADRYEE CCCCCCCCCCEEEEEEECCCEEECCCCCCCCEEEEEEEECCCEEEECCCHHHHHHHHHHH FQKLGVEIYGVSTDTHFTHKAWHDTSDTIAKIKYPLVGDPTATLARAFDVLIEEEGLALR HHHCCEEEEEECCCCCEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEE GTFVINPEGEIKIAEIHDNGIGRDAGELLRKVQAAQYVASHPGEVCPAKWTPGAETLTPS EEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC LDLVGKI HHEEECC >Mature Secondary Structure PIINSQIKPFKATAYHNGDFVPVSDESLKGKWSVVVFYPADFTFVCPTELGDLADRYEE CCCCCCCCCEEEEEEECCCEEECCCCCCCCEEEEEEEECCCEEEECCCHHHHHHHHHHH FQKLGVEIYGVSTDTHFTHKAWHDTSDTIAKIKYPLVGDPTATLARAFDVLIEEEGLALR HHHCCEEEEEECCCCCEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEE GTFVINPEGEIKIAEIHDNGIGRDAGELLRKVQAAQYVASHPGEVCPAKWTPGAETLTPS EEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC LDLVGKI HHEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]