Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is 238024559
Identifier: 238024559
GI number: 238024559
Start: 1480141
End: 1481346
Strand: Reverse
Name: 238024559
Synonym: bglu_2g11660
Alternate gene names: NA
Gene position: 1481346-1480141 (Counterclockwise)
Preceding gene: 238024560
Following gene: 238024558
Centisome position: 52.39
GC content: 76.04
Gene sequence:
>1206_bases GTGTCGCCGGCTGATCCGCACCGCGCCGAGGCAGCCGGCGAGCGGGGCGGCGCCGCCGCGCCCGCGCGCGGCCGCGGCGC GGCGGGCGCCATGCTGGCCGCGCTGCTGGTTGCGCTCGGTCTCGTGCTGCAGGGGTATGTGTGGCTGCTGAGCGCGCGCA GCCTGCCGGACCCCTCGGTGCACTGGCTCTCGGGCCTGCCGGTGGCGGCCGAGGCCTCGGCCGCGGCGGCCGCCGTCAAC ACGCGGCTGGTGGCGGTCTGCCTGGCGCTGCTGGCGCTGGCCGCGCTGCTGGCCACGGCCGGCAGCGCGCGGCTGCTGCC GCGCGCGCTGCGGCCCGCCACCGCGCGCGGCCTGGTGCTGCTCGGCTTCCTGAATTTCGCGGTGCCGTTCGGCGGCGTGA TCTGCACGCTCGGCGCGTTCGCGCTCTCGCGCGTGCTGCCGGCCAACCGCGCGCGCCTCGCGGTGAGCACGGTGGAGGAG CCCGAGTTCGCCGAATACCTGATCGGCGCGGTCTCGTATGGCCGCGGCGCGCGCCTGAAGGCCGAGCTGCGCAACGCCGA GGCCAGCGTCGATTTCCGCATGACGGCGCTGCTCGCCATGCAGTCGCTGCCGGTGCGCACCGTCTCGCCGATCCTGCAGG AGATGCTGGCCGATCCGCTCGACGACATCCGCCTGCTCGCCTACGGCAGCCTGGAAAGCAAGGAGAAGGCGCTGACCCAG CGCATCACCGCCGAGCGCGCGGCGCTGGAGGCGCTGCAGGCGCCCGGCGCCGGCGCGCGGCCGGCGGAAGAGCGCGCCCG CGCCAACAAGGTGCTCGCCGAGCTGTATGGCGAGCTGATCTACCAGCAGCTGGTGACGGGTGACGTCTACGACAACGCGA TCGCCCAGGCCGACCGCTTCGCCGAGGCCGCGCTCGCGCTGATGCCCGACGATGCCGCGCTGTGGCGCCTGCGCGGCCGG CTCGCGCTGCTGCGGCGCGATCTGGACGCGGCCGATGCGCTGCTGCAGCGCGCGATCGACAGCGGCTTCCCGCGCGACCG GCTGCTGCCGTACCTGGCCGAGTCCGCCTACTGGCGGCGCGATTTCGCGCGCGTCGCCAGCCTGCTCGGCGCGATGGAGG CGAGCGGCGTGCCGCCCGCGCTGCGCGCCGCGCTCGAATTCTGGCAGCCGGCCGCGGCCGCGCCGGCGCCGCATGCCGAT GAGTGA
Upstream 100 bases:
>100_bases TTCGGCATCGATTTCGAGGGCGCGCACGTGGCCGTCTATTCGATGCACGTGCCGGCCGAGGAGCCGATGCGTCCGCTCGT CAAGCTGATGGAGCACTGCG
Downstream 100 bases:
>100_bases GCCGATGTCCACACCCCCCTCCTGCGCGCTGCCGCGCGCCGCCTCCGCCGACGTGCTGCTGCTGCTCGAGGGCACGTTTC CATACGTGAGCGGCGGCGTG
Product: polysaccharide transport system component transmembrane protein ragE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 401; Mature: 400
Protein sequence:
>401_residues MSPADPHRAEAAGERGGAAAPARGRGAAGAMLAALLVALGLVLQGYVWLLSARSLPDPSVHWLSGLPVAAEASAAAAAVN TRLVAVCLALLALAALLATAGSARLLPRALRPATARGLVLLGFLNFAVPFGGVICTLGAFALSRVLPANRARLAVSTVEE PEFAEYLIGAVSYGRGARLKAELRNAEASVDFRMTALLAMQSLPVRTVSPILQEMLADPLDDIRLLAYGSLESKEKALTQ RITAERAALEALQAPGAGARPAEERARANKVLAELYGELIYQQLVTGDVYDNAIAQADRFAEAALALMPDDAALWRLRGR LALLRRDLDAADALLQRAIDSGFPRDRLLPYLAESAYWRRDFARVASLLGAMEASGVPPALRAALEFWQPAAAAPAPHAD E
Sequences:
>Translated_401_residues MSPADPHRAEAAGERGGAAAPARGRGAAGAMLAALLVALGLVLQGYVWLLSARSLPDPSVHWLSGLPVAAEASAAAAAVN TRLVAVCLALLALAALLATAGSARLLPRALRPATARGLVLLGFLNFAVPFGGVICTLGAFALSRVLPANRARLAVSTVEE PEFAEYLIGAVSYGRGARLKAELRNAEASVDFRMTALLAMQSLPVRTVSPILQEMLADPLDDIRLLAYGSLESKEKALTQ RITAERAALEALQAPGAGARPAEERARANKVLAELYGELIYQQLVTGDVYDNAIAQADRFAEAALALMPDDAALWRLRGR LALLRRDLDAADALLQRAIDSGFPRDRLLPYLAESAYWRRDFARVASLLGAMEASGVPPALRAALEFWQPAAAAPAPHAD E >Mature_400_residues SPADPHRAEAAGERGGAAAPARGRGAAGAMLAALLVALGLVLQGYVWLLSARSLPDPSVHWLSGLPVAAEASAAAAAVNT RLVAVCLALLALAALLATAGSARLLPRALRPATARGLVLLGFLNFAVPFGGVICTLGAFALSRVLPANRARLAVSTVEEP EFAEYLIGAVSYGRGARLKAELRNAEASVDFRMTALLAMQSLPVRTVSPILQEMLADPLDDIRLLAYGSLESKEKALTQR ITAERAALEALQAPGAGARPAEERARANKVLAELYGELIYQQLVTGDVYDNAIAQADRFAEAALALMPDDAALWRLRGRL ALLRRDLDAADALLQRAIDSGFPRDRLLPYLAESAYWRRDFARVASLLGAMEASGVPPALRAALEFWQPAAAAPAPHADE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42270; Mature: 42139
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPADPHRAEAAGERGGAAAPARGRGAAGAMLAALLVALGLVLQGYVWLLSARSLPDPSV CCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH HWLSGLPVAAEASAAAAAVNTRLVAVCLALLALAALLATAGSARLLPRALRPATARGLVL HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHH LGFLNFAVPFGGVICTLGAFALSRVLPANRARLAVSTVEEPEFAEYLIGAVSYGRGARLK HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCCHHHHHHHHHHHHCCCCCCHH AELRNAEASVDFRMTALLAMQSLPVRTVSPILQEMLADPLDDIRLLAYGSLESKEKALTQ HHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHH RITAERAALEALQAPGAGARPAEERARANKVLAELYGELIYQQLVTGDVYDNAIAQADRF HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH AEAALALMPDDAALWRLRGRLALLRRDLDAADALLQRAIDSGFPRDRLLPYLAESAYWRR HHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH DFARVASLLGAMEASGVPPALRAALEFWQPAAAAPAPHADE HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SPADPHRAEAAGERGGAAAPARGRGAAGAMLAALLVALGLVLQGYVWLLSARSLPDPSV CCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH HWLSGLPVAAEASAAAAAVNTRLVAVCLALLALAALLATAGSARLLPRALRPATARGLVL HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHH LGFLNFAVPFGGVICTLGAFALSRVLPANRARLAVSTVEEPEFAEYLIGAVSYGRGARLK HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCCHHHHHHHHHHHHCCCCCCHH AELRNAEASVDFRMTALLAMQSLPVRTVSPILQEMLADPLDDIRLLAYGSLESKEKALTQ HHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHH RITAERAALEALQAPGAGARPAEERARANKVLAELYGELIYQQLVTGDVYDNAIAQADRF HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH AEAALALMPDDAALWRLRGRLALLRRDLDAADALLQRAIDSGFPRDRLLPYLAESAYWRR HHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH DFARVASLLGAMEASGVPPALRAALEFWQPAAAAPAPHADE HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA