Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is 238024560
Identifier: 238024560
GI number: 238024560
Start: 1481333
End: 1482808
Strand: Reverse
Name: 238024560
Synonym: bglu_2g11670
Alternate gene names: NA
Gene position: 1482808-1481333 (Counterclockwise)
Preceding gene: 238024561
Following gene: 238024559
Centisome position: 52.45
GC content: 73.37
Gene sequence:
>1476_bases ATGAATACGCAGGCAACGGGGCCGGGCGAGCCCGGCAAGCGCGGGGCGCCGGCGCGCACCGTGCGCGCCACCGGCGCGGC CGCATGGTGGAGCGCGCTGATCGCGCCGCCCGACCGCTCGCCGCGGCGGCGCGCGATCGCGCTGGCCGAGACGCTGGTCT TCACGCTGGTGGTGATCGCGCTGTGCCGCGTGTTCGCGGCCGACGATCCGCTGCTGATCCACGCCGGCTTCGGCTGGATC TGGCTCGCGCCGGTGCTGATCGCGCTGCGCGCCGGCTCGGCCGCGGGCCTCGTGTCGGGCTTCATGGTGCTGGCCGCCTG GTATCTGCTGTATCCGGCCGTGCCGGTGCCGGCCGCCGCGGCTGGCTTCGCGGGCGAGACCACCCTGGTGCGGCCGTTCC CGACCGGATTCTTCTTCGGCGGCTTCCTGCTCACGCTGCTGACCGGCCAGTTCGGCGACATCTGGATCGCGCGGCTGCGC CAGAACCGCATCGCCAACGATTACCTGTCCGAGCGCCTGTCGATCCTGACGCGCAACCAGTTCATGCTGCGGCTCTCGCA CGAGCGGCTCGAGCAGGACCTGCTGAGCCGCCCGGCCACGCTGCGCGATTCGCTCGCGCGGCTGCGCGCGGTGGTGTTCG ACGCCACGCCGTCGGCGGCCGAGCAGGGCGAGGTCGCGCTGCGCGGCGCGCAGGCGTTCCTCGACGCGGCCGCGCAGGCG GTACAGCTCGAAGTGGCGAGCGTGCACGCCTGGCGGCACGGCGCACCGGCCGCCGAGGCGGCCGCCGCGATCGGCGGCGC CGCGCCGCTCGACGCCGGCGATCCGCTGGTGCGCGAGGCGCTCGACACGCGCAAGCTGGTCCACGTCGAGGCGCGCGGCG ACGCGGCCGCCTCGATCGGCAGCCGCTATCTGGCCTGCGTGCCGCTGCTGGACGTGAAGGGCGCGCCGGTGGGGGTGATG GCGATCGAGCGCATGCCGTTCCTCGCGCTCACGCGCGACAACCTGCAGTTCCTGCTGGTGCTCTGCAACTTCTACGCGGA CGGCGTGCGCCATGCCGAGGTCACGCGCGAGATGCTGGCGGCGTTCCCCGACTGTCCGCACCGCTTCGCGCTCGACTACG CGCGGCTCGTCCACCTGCGTCGCGACTCCGGCGTGCTGTCGGCCGTCGTCACGCTGGTGTTCGACAGCGACGAACGCGGC GCCGCGCTCTGCGAGCACGTGGTGCGCACGCGCCGCGCGCTCGACTCGCAATGGGAGATCGTCGGCGCGCGCCGCCGTGC CGTGCTGACGCTGATGCCGCTGTCCGGCACGAGCGGCGTGGACGGCTACCTGATGCGCATCGAGGACAGCCTGCGCGCGC AGTTCGGCATCGATTTCGAGGGCGCGCACGTGGCCGTCTATTCGATGCACGTGCCGGCCGAGGAGCCGATGCGTCCGCTC GTCAAGCTGATGGAGCACTGCGGTGTCGCCGGCTGA
Upstream 100 bases:
>100_bases AGCGGTGCCGGCCAGGCGGGGCGCGCGATGAAGCGGACTTCGACATCGATCAGGCGGTGCGCATGATGAAGCGGACTTCG ACATCGATCAGGCGGTGCGC
Downstream 100 bases:
>100_bases TCCGCACCGCGCCGAGGCAGCCGGCGAGCGGGGCGGCGCCGCCGCGCCCGCGCGCGGCCGCGGCGCGGCGGGCGCCATGC TGGCCGCGCTGCTGGTTGCG
Product: polysaccharide transport system component transmembrane protein ragD
Products: NA
Alternate protein names: Polysaccharide Transporter Component Transmembrane Protein
Number of amino acids: Translated: 491; Mature: 491
Protein sequence:
>491_residues MNTQATGPGEPGKRGAPARTVRATGAAAWWSALIAPPDRSPRRRAIALAETLVFTLVVIALCRVFAADDPLLIHAGFGWI WLAPVLIALRAGSAAGLVSGFMVLAAWYLLYPAVPVPAAAAGFAGETTLVRPFPTGFFFGGFLLTLLTGQFGDIWIARLR QNRIANDYLSERLSILTRNQFMLRLSHERLEQDLLSRPATLRDSLARLRAVVFDATPSAAEQGEVALRGAQAFLDAAAQA VQLEVASVHAWRHGAPAAEAAAAIGGAAPLDAGDPLVREALDTRKLVHVEARGDAAASIGSRYLACVPLLDVKGAPVGVM AIERMPFLALTRDNLQFLLVLCNFYADGVRHAEVTREMLAAFPDCPHRFALDYARLVHLRRDSGVLSAVVTLVFDSDERG AALCEHVVRTRRALDSQWEIVGARRRAVLTLMPLSGTSGVDGYLMRIEDSLRAQFGIDFEGAHVAVYSMHVPAEEPMRPL VKLMEHCGVAG
Sequences:
>Translated_491_residues MNTQATGPGEPGKRGAPARTVRATGAAAWWSALIAPPDRSPRRRAIALAETLVFTLVVIALCRVFAADDPLLIHAGFGWI WLAPVLIALRAGSAAGLVSGFMVLAAWYLLYPAVPVPAAAAGFAGETTLVRPFPTGFFFGGFLLTLLTGQFGDIWIARLR QNRIANDYLSERLSILTRNQFMLRLSHERLEQDLLSRPATLRDSLARLRAVVFDATPSAAEQGEVALRGAQAFLDAAAQA VQLEVASVHAWRHGAPAAEAAAAIGGAAPLDAGDPLVREALDTRKLVHVEARGDAAASIGSRYLACVPLLDVKGAPVGVM AIERMPFLALTRDNLQFLLVLCNFYADGVRHAEVTREMLAAFPDCPHRFALDYARLVHLRRDSGVLSAVVTLVFDSDERG AALCEHVVRTRRALDSQWEIVGARRRAVLTLMPLSGTSGVDGYLMRIEDSLRAQFGIDFEGAHVAVYSMHVPAEEPMRPL VKLMEHCGVAG >Mature_491_residues MNTQATGPGEPGKRGAPARTVRATGAAAWWSALIAPPDRSPRRRAIALAETLVFTLVVIALCRVFAADDPLLIHAGFGWI WLAPVLIALRAGSAAGLVSGFMVLAAWYLLYPAVPVPAAAAGFAGETTLVRPFPTGFFFGGFLLTLLTGQFGDIWIARLR QNRIANDYLSERLSILTRNQFMLRLSHERLEQDLLSRPATLRDSLARLRAVVFDATPSAAEQGEVALRGAQAFLDAAAQA VQLEVASVHAWRHGAPAAEAAAAIGGAAPLDAGDPLVREALDTRKLVHVEARGDAAASIGSRYLACVPLLDVKGAPVGVM AIERMPFLALTRDNLQFLLVLCNFYADGVRHAEVTREMLAAFPDCPHRFALDYARLVHLRRDSGVLSAVVTLVFDSDERG AALCEHVVRTRRALDSQWEIVGARRRAVLTLMPLSGTSGVDGYLMRIEDSLRAQFGIDFEGAHVAVYSMHVPAEEPMRPL VKLMEHCGVAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52930; Mature: 52930
Theoretical pI: Translated: 7.91; Mature: 7.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTQATGPGEPGKRGAPARTVRATGAAAWWSALIAPPDRSPRRRAIALAETLVFTLVVIA CCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH LCRVFAADDPLLIHAGFGWIWLAPVLIALRAGSAAGLVSGFMVLAAWYLLYPAVPVPAAA HHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH AGFAGETTLVRPFPTGFFFGGFLLTLLTGQFGDIWIARLRQNRIANDYLSERLSILTRNQ CCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FMLRLSHERLEQDLLSRPATLRDSLARLRAVVFDATPSAAEQGEVALRGAQAFLDAAAQA HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH VQLEVASVHAWRHGAPAAEAAAAIGGAAPLDAGDPLVREALDTRKLVHVEARGDAAASIG HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEEEECCCCHHHHHC SRYLACVPLLDVKGAPVGVMAIERMPFLALTRDNLQFLLVLCNFYADGVRHAEVTREMLA CCCEEEEEEEECCCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHH AFPDCPHRFALDYARLVHLRRDSGVLSAVVTLVFDSDERGAALCEHVVRTRRALDSQWEI HCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHH VGARRRAVLTLMPLSGTSGVDGYLMRIEDSLRAQFGIDFEGAHVAVYSMHVPAEEPMRPL HHCCCEEEEEEEECCCCCCCCCEEEEEEHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHH VKLMEHCGVAG HHHHHHCCCCC >Mature Secondary Structure MNTQATGPGEPGKRGAPARTVRATGAAAWWSALIAPPDRSPRRRAIALAETLVFTLVVIA CCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH LCRVFAADDPLLIHAGFGWIWLAPVLIALRAGSAAGLVSGFMVLAAWYLLYPAVPVPAAA HHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH AGFAGETTLVRPFPTGFFFGGFLLTLLTGQFGDIWIARLRQNRIANDYLSERLSILTRNQ CCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FMLRLSHERLEQDLLSRPATLRDSLARLRAVVFDATPSAAEQGEVALRGAQAFLDAAAQA HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH VQLEVASVHAWRHGAPAAEAAAAIGGAAPLDAGDPLVREALDTRKLVHVEARGDAAASIG HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEEEECCCCHHHHHC SRYLACVPLLDVKGAPVGVMAIERMPFLALTRDNLQFLLVLCNFYADGVRHAEVTREMLA CCCEEEEEEEECCCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHH AFPDCPHRFALDYARLVHLRRDSGVLSAVVTLVFDSDERGAALCEHVVRTRRALDSQWEI HCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHH VGARRRAVLTLMPLSGTSGVDGYLMRIEDSLRAQFGIDFEGAHVAVYSMHVPAEEPMRPL HHCCCEEEEEEEECCCCCCCCCEEEEEEHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHH VKLMEHCGVAG HHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA