| Definition | Brucella suis 1330 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_004310 |
| Length | 2,107,794 |
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The map label for this gene is ppi [H]
Identifier: 23501971
GI number: 23501971
Start: 1067965
End: 1068471
Strand: Reverse
Name: ppi [H]
Synonym: BR1093
Alternate gene names: 23501971
Gene position: 1068471-1067965 (Counterclockwise)
Preceding gene: 23501972
Following gene: 23501970
Centisome position: 50.69
GC content: 59.57
Gene sequence:
>507_bases ATGGCTTATAAAGACCCAGAAAATACGCTCGTTCTCGAAACCACAAAGGGCAATGTGGTGCTGGAGCTCTACCCGGATCT CGCACCGGGCCATGTCGCGCGCATCAAGGAACTGGCACGCGAAGGCGCTTATGACGGCGTTGTCTTCCATCGCGTGATCG ACGGTTTCATGGCGCAGACCGGCGACGTGAAGTTCGGCAAGTCGGGTGGCGCTCATTTCGACGGTTCGCGCGCTGGCATG GGCGGTTCGGACAAGGCGGACCTGAAGGCTGAATTTTCCAACACGCCGCACAAGCGCGGTACGGCCTCCATGGCGCGCTC CGCCAATCCGAATTCGGCCAATTCGCAGTTCTTCATCTGCTTTGCCGATGCTCCATGGCTCGACCGCCAGTACACCGTCT GGGGTCAGGTCATCGAAGGCATGGATAATGTCGACCAGATCAAGCGTGGCGAGCCGGTTTCCGATCCGGACAAGATCGTG ACCGCGCGTATCGCCGCCGACATCTGA
Upstream 100 bases:
>100_bases AAATCATCAAGGCCACCATCGAAGCTGACACGAAGTAACACCCATCTGGCGCCCCGGAAACGGTTGAACTTTCGGGGTGC AAATCAACAGGAGAGGCCCA
Downstream 100 bases:
>100_bases TTCAATAGTTTGTATCGAGAAATCTCGGCTCCGGCTTCGGCCGGGGCCGACTTTATGCGTTGCGTTTCCAAACGCGATAT TGCTTCGCGCTTTCGCTGGA
Product: cyclophilin-type peptidyl-prolyl cis-trans isomerase
Products: NA
Alternate protein names: PPIase; Rotamase [H]
Number of amino acids: Translated: 168; Mature: 167
Protein sequence:
>168_residues MAYKDPENTLVLETTKGNVVLELYPDLAPGHVARIKELAREGAYDGVVFHRVIDGFMAQTGDVKFGKSGGAHFDGSRAGM GGSDKADLKAEFSNTPHKRGTASMARSANPNSANSQFFICFADAPWLDRQYTVWGQVIEGMDNVDQIKRGEPVSDPDKIV TARIAADI
Sequences:
>Translated_168_residues MAYKDPENTLVLETTKGNVVLELYPDLAPGHVARIKELAREGAYDGVVFHRVIDGFMAQTGDVKFGKSGGAHFDGSRAGM GGSDKADLKAEFSNTPHKRGTASMARSANPNSANSQFFICFADAPWLDRQYTVWGQVIEGMDNVDQIKRGEPVSDPDKIV TARIAADI >Mature_167_residues AYKDPENTLVLETTKGNVVLELYPDLAPGHVARIKELAREGAYDGVVFHRVIDGFMAQTGDVKFGKSGGAHFDGSRAGMG GSDKADLKAEFSNTPHKRGTASMARSANPNSANSQFFICFADAPWLDRQYTVWGQVIEGMDNVDQIKRGEPVSDPDKIVT ARIAADI
Specific function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides [H]
COG id: COG0652
COG function: function code O; Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PPIase cyclophilin-type domain [H]
Homologues:
Organism=Homo sapiens, GI7706339, Length=142, Percent_Identity=37.3239436619718, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI19557636, Length=141, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=7e-17, Organism=Homo sapiens, GI24308049, Length=144, Percent_Identity=36.8055555555556, Blast_Score=84, Evalue=7e-17, Organism=Homo sapiens, GI22547215, Length=145, Percent_Identity=37.2413793103448, Blast_Score=79, Evalue=1e-15, Organism=Homo sapiens, GI22547212, Length=145, Percent_Identity=37.2413793103448, Blast_Score=79, Evalue=1e-15, Organism=Homo sapiens, GI7657473, Length=145, Percent_Identity=37.2413793103448, Blast_Score=79, Evalue=1e-15, Organism=Homo sapiens, GI10863927, Length=139, Percent_Identity=36.6906474820144, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI5031987, Length=136, Percent_Identity=38.2352941176471, Blast_Score=75, Evalue=3e-14, Organism=Homo sapiens, GI310110104, Length=136, Percent_Identity=35.2941176470588, Blast_Score=73, Evalue=1e-13, Organism=Homo sapiens, GI310129267, Length=136, Percent_Identity=34.5588235294118, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI310120620, Length=136, Percent_Identity=34.5588235294118, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI169163387, Length=108, Percent_Identity=38.8888888888889, Blast_Score=67, Evalue=9e-12, Organism=Homo sapiens, GI169164185, Length=108, Percent_Identity=38.8888888888889, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI169163623, Length=108, Percent_Identity=38.8888888888889, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI64276486, Length=130, Percent_Identity=33.0769230769231, Blast_Score=66, Evalue=2e-11, Organism=Escherichia coli, GI1786736, Length=149, Percent_Identity=35.5704697986577, Blast_Score=85, Evalue=3e-18, Organism=Escherichia coli, GI1789763, Length=165, Percent_Identity=35.1515151515151, Blast_Score=78, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71980594, Length=140, Percent_Identity=35.7142857142857, Blast_Score=85, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71980590, Length=140, Percent_Identity=35.7142857142857, Blast_Score=85, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17539496, Length=140, Percent_Identity=36.4285714285714, Blast_Score=84, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17539498, Length=157, Percent_Identity=33.1210191082803, Blast_Score=77, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17506311, Length=144, Percent_Identity=34.0277777777778, Blast_Score=77, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17565860, Length=162, Percent_Identity=35.1851851851852, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17559074, Length=157, Percent_Identity=33.1210191082803, Blast_Score=72, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17566266, Length=145, Percent_Identity=33.1034482758621, Blast_Score=70, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17552782, Length=143, Percent_Identity=32.8671328671329, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17552780, Length=136, Percent_Identity=36.0294117647059, Blast_Score=69, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17506307, Length=140, Percent_Identity=34.2857142857143, Blast_Score=67, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71997782, Length=130, Percent_Identity=33.8461538461538, Blast_Score=66, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6320359, Length=158, Percent_Identity=33.5443037974684, Blast_Score=74, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323562, Length=138, Percent_Identity=36.231884057971, Blast_Score=73, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6320510, Length=139, Percent_Identity=34.5323741007194, Blast_Score=65, Evalue=8e-12, Organism=Drosophila melanogaster, GI17986117, Length=161, Percent_Identity=37.888198757764, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI19922912, Length=150, Percent_Identity=40.6666666666667, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI24652460, Length=146, Percent_Identity=35.6164383561644, Blast_Score=79, Evalue=1e-15, Organism=Drosophila melanogaster, GI45549139, Length=136, Percent_Identity=35.2941176470588, Blast_Score=74, Evalue=4e-14, Organism=Drosophila melanogaster, GI24664125, Length=135, Percent_Identity=37.037037037037, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI21357783, Length=135, Percent_Identity=37.037037037037, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI19922376, Length=142, Percent_Identity=33.0985915492958, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI17647301, Length=138, Percent_Identity=34.0579710144928, Blast_Score=67, Evalue=4e-12, Organism=Drosophila melanogaster, GI17136360, Length=136, Percent_Identity=33.0882352941176, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI24650807, Length=149, Percent_Identity=34.2281879194631, Blast_Score=64, Evalue=5e-11,
Paralogues:
None
Copy number: 780 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015891 - InterPro: IPR020892 - InterPro: IPR002130 [H]
Pfam domain/function: PF00160 Pro_isomerase [H]
EC number: =5.2.1.8 [H]
Molecular weight: Translated: 18204; Mature: 18072
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: PS00170 CSA_PPIASE_1 ; PS50072 CSA_PPIASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYKDPENTLVLETTKGNVVLELYPDLAPGHVARIKELAREGAYDGVVFHRVIDGFMAQT CCCCCCCCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC GDVKFGKSGGAHFDGSRAGMGGSDKADLKAEFSNTPHKRGTASMARSANPNSANSQFFIC CCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHCCCCCCCCCEEEEE FADAPWLDRQYTVWGQVIEGMDNVDQIKRGEPVSDPDKIVTARIAADI ECCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCHHHEEEEEEECCC >Mature Secondary Structure AYKDPENTLVLETTKGNVVLELYPDLAPGHVARIKELAREGAYDGVVFHRVIDGFMAQT CCCCCCCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC GDVKFGKSGGAHFDGSRAGMGGSDKADLKAEFSNTPHKRGTASMARSANPNSANSQFFIC CCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHCCCCCCCCCEEEEE FADAPWLDRQYTVWGQVIEGMDNVDQIKRGEPVSDPDKIVTARIAADI ECCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCHHHEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA