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The map label for this gene is yciC [H]

Identifier: 23100884

GI number: 23100884

Start: 3567684

End: 3568883

Strand: Reverse

Name: yciC [H]

Synonym: OB3429

Alternate gene names: 23100884

Gene position: 3568883-3567684 (Counterclockwise)

Preceding gene: 23100885

Following gene: 23100883

Centisome position: 98.3

GC content: 36.75

Gene sequence:

>1200_bases
ATGAAAAGAAAAATCCCAGTTACTGTGTTAAGTGGATATTTAGGTGCAGGAAAGACTACATTATTAAATCATATTTTAAA
TAATAGGGATAATCTTAAAGTAGCTGTCATTGTCAATGATATGAGTGAAGTTAATATCGATGCAGATCTTGTGGAAACAG
GAGGTAATTTCTCCCGAACGGAAGAGAATCTAGTTGAGATGTCTAATGGATGCATTTGCTGTACGCTAAGAGAAGATTTG
CTCATTGAAGTGGAAAAAATCGCAAAAAATGGAGACATTGACTATATCGTTATTGAATCATCAGGAATTAGTGAACCAAT
CCCGGTTGCTCAAACATTTTCTTACATTGATAAGGAAATGGGTATTGATCTTACGAATTTCTGTCGTTTAGATACGATGG
TGACGGTGGTAGATGCGTATCGATTCTGGCATGATTATGAATCAGGGGATAAATTGCTTGACCGTAAACAAGCAGTAGGA
GAATTAGATGAAAGAAATCTAGCAGACTTGCTTATCGATCAAATTGAGTTTTGTGACGTTTTAATGATCAATAAATGTGA
CATGGTGAGTGAAGAACAGCTAGAATCATTGACTAGAGTAATACAAACATTACAGCCAGATGCCAAAATTATTCAAACAA
ACTATAGTGAAATTAATCCAGAAGAAATACTAAATACGAATCTTTTTAGTTTTGAAAGGGCAAGTCAATCTGCAGGTTGG
TTAAAAGAATTAATGGCTGGTCCAGAAGAGCATACTCCAGAAACAGAAGAGTATGGTATTAATTCTTTTGTGTATAGCAG
GAGAGTTCCTTTTCATTCGGAACGTTTTTATAATTGGATTAGTCAGATGCCTATGGCTGTCGTACGTGCAAAGGGAATTT
CTTGGTGTGCAACGAGAAATGATTTAGCACTTCTACTTTCTCAAGCAGGACCATCCGTATCTATAGAGCCAATATCCTAC
TGGGTGGACGCTTTAACAAAGCGAGAAAAAGACCGTGTTTTGAGAAACAATCCAAATTTACGAGAGGATTGGGATGAGTT
ATACGGTGATCGGAAAACCAACCTTGTATTCATCGGCGTAGATTTGCCTAAAGAAGTAATTATTAGAGAACTAGATGAAT
GCTTGTTGACTAAGGAAGAGATGGGAATAGATTGGTCAACGATGAATAATCCCTTTGTGTGGGAAGTAGGTAGTCACTAG

Upstream 100 bases:

>100_bases
AAGTATTTTTTTAGTGTTTTAATCGTAATGATTACGTTTTTTAGAGAGACGCAAATCCATCTAATGGGCTATTAAAATTT
GAAAATCAAAGGAGAAAAAT

Downstream 100 bases:

>100_bases
AGTGAACCAGTTTACAGCTCCTTTCCTGTATCTTTCCCCTTCAATTCGTTATAATGAAAGGAGAGCATTAGGAACGTAGA
GGAGTGCAACGGAGTGAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MKRKIPVTVLSGYLGAGKTTLLNHILNNRDNLKVAVIVNDMSEVNIDADLVETGGNFSRTEENLVEMSNGCICCTLREDL
LIEVEKIAKNGDIDYIVIESSGISEPIPVAQTFSYIDKEMGIDLTNFCRLDTMVTVVDAYRFWHDYESGDKLLDRKQAVG
ELDERNLADLLIDQIEFCDVLMINKCDMVSEEQLESLTRVIQTLQPDAKIIQTNYSEINPEEILNTNLFSFERASQSAGW
LKELMAGPEEHTPETEEYGINSFVYSRRVPFHSERFYNWISQMPMAVVRAKGISWCATRNDLALLLSQAGPSVSIEPISY
WVDALTKREKDRVLRNNPNLREDWDELYGDRKTNLVFIGVDLPKEVIIRELDECLLTKEEMGIDWSTMNNPFVWEVGSH

Sequences:

>Translated_399_residues
MKRKIPVTVLSGYLGAGKTTLLNHILNNRDNLKVAVIVNDMSEVNIDADLVETGGNFSRTEENLVEMSNGCICCTLREDL
LIEVEKIAKNGDIDYIVIESSGISEPIPVAQTFSYIDKEMGIDLTNFCRLDTMVTVVDAYRFWHDYESGDKLLDRKQAVG
ELDERNLADLLIDQIEFCDVLMINKCDMVSEEQLESLTRVIQTLQPDAKIIQTNYSEINPEEILNTNLFSFERASQSAGW
LKELMAGPEEHTPETEEYGINSFVYSRRVPFHSERFYNWISQMPMAVVRAKGISWCATRNDLALLLSQAGPSVSIEPISY
WVDALTKREKDRVLRNNPNLREDWDELYGDRKTNLVFIGVDLPKEVIIRELDECLLTKEEMGIDWSTMNNPFVWEVGSH
>Mature_399_residues
MKRKIPVTVLSGYLGAGKTTLLNHILNNRDNLKVAVIVNDMSEVNIDADLVETGGNFSRTEENLVEMSNGCICCTLREDL
LIEVEKIAKNGDIDYIVIESSGISEPIPVAQTFSYIDKEMGIDLTNFCRLDTMVTVVDAYRFWHDYESGDKLLDRKQAVG
ELDERNLADLLIDQIEFCDVLMINKCDMVSEEQLESLTRVIQTLQPDAKIIQTNYSEINPEEILNTNLFSFERASQSAGW
LKELMAGPEEHTPETEEYGINSFVYSRRVPFHSERFYNWISQMPMAVVRAKGISWCATRNDLALLLSQAGPSVSIEPISY
WVDALTKREKDRVLRNNPNLREDWDELYGDRKTNLVFIGVDLPKEVIIRELDECLLTKEEMGIDWSTMNNPFVWEVGSH

Specific function: May bind GTP. Might act as metal chaperone (Potential). Contributes to optimal growth under starvation for zinc [H]

COG id: COG0523

COG function: function code R; Putative GTPases (G3E family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cobW C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI33469141, Length=229, Percent_Identity=34.4978165938865, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI126722884, Length=229, Percent_Identity=34.4978165938865, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI148727351, Length=229, Percent_Identity=34.061135371179, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI223941779, Length=219, Percent_Identity=35.1598173515982, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI146231952, Length=264, Percent_Identity=32.1969696969697, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI223941776, Length=230, Percent_Identity=32.1739130434783, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI119120938, Length=145, Percent_Identity=40, Blast_Score=99, Evalue=5e-21,
Organism=Escherichia coli, GI87082430, Length=376, Percent_Identity=26.5957446808511, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788499, Length=213, Percent_Identity=28.169014084507, Blast_Score=82, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6324356, Length=250, Percent_Identity=28.4, Blast_Score=95, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR011629 [H]

Pfam domain/function: PF02492 cobW; PF07683 CobW_C [H]

EC number: NA

Molecular weight: Translated: 45538; Mature: 45538

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKIPVTVLSGYLGAGKTTLLNHILNNRDNLKVAVIVNDMSEVNIDADLVETGGNFSRT
CCCCCCHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEEEECCHHCCCCHHHHHCCCCCCHH
EENLVEMSNGCICCTLREDLLIEVEKIAKNGDIDYIVIESSGISEPIPVAQTFSYIDKEM
HHHHHHHCCCEEEEEECHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
GIDLTNFCRLDTMVTVVDAYRFWHDYESGDKLLDRKQAVGELDERNLADLLIDQIEFCDV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
LMINKCDMVSEEQLESLTRVIQTLQPDAKIIQTNYSEINPEEILNTNLFSFERASQSAGW
CEECCCCCCCHHHHHHHHHHHHHHCCCHHEEECCCCCCCHHHHHCCCHHHHHHHHHHHHH
LKELMAGPEEHTPETEEYGINSFVYSRRVPFHSERFYNWISQMPMAVVRAKGISWCATRN
HHHHHCCCCCCCCCHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCC
DLALLLSQAGPSVSIEPISYWVDALTKREKDRVLRNNPNLREDWDELYGDRKTNLVFIGV
CHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEC
DLPKEVIIRELDECLLTKEEMGIDWSTMNNPFVWEVGSH
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC
>Mature Secondary Structure
MKRKIPVTVLSGYLGAGKTTLLNHILNNRDNLKVAVIVNDMSEVNIDADLVETGGNFSRT
CCCCCCHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEEEECCHHCCCCHHHHHCCCCCCHH
EENLVEMSNGCICCTLREDLLIEVEKIAKNGDIDYIVIESSGISEPIPVAQTFSYIDKEM
HHHHHHHCCCEEEEEECHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
GIDLTNFCRLDTMVTVVDAYRFWHDYESGDKLLDRKQAVGELDERNLADLLIDQIEFCDV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
LMINKCDMVSEEQLESLTRVIQTLQPDAKIIQTNYSEINPEEILNTNLFSFERASQSAGW
CEECCCCCCCHHHHHHHHHHHHHHCCCHHEEECCCCCCCHHHHHCCCHHHHHHHHHHHHH
LKELMAGPEEHTPETEEYGINSFVYSRRVPFHSERFYNWISQMPMAVVRAKGISWCATRN
HHHHHCCCCCCCCCHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCC
DLALLLSQAGPSVSIEPISYWVDALTKREKDRVLRNNPNLREDWDELYGDRKTNLVFIGV
CHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEC
DLPKEVIIRELDECLLTKEEMGIDWSTMNNPFVWEVGSH
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377; 9811636 [H]