Click here to switch to the map view.

The map label for this gene is amyD [H]

Identifier: 23100024

GI number: 23100024

Start: 2627060

End: 2627920

Strand: Reverse

Name: amyD [H]

Synonym: OB2569

Alternate gene names: 23100024

Gene position: 2627920-2627060 (Counterclockwise)

Preceding gene: 23100025

Following gene: 23100023

Centisome position: 72.38

GC content: 34.49

Gene sequence:

>861_bases
ATGAAAAATAGAAGTCTATCTTTCTGGTTATTTATGACTCCGACATTAGTTGCTCTAGGGTTGGTAGTGTTTGTACCATT
TATTTATGGATTTGTTTACTCCTTTACCGATTGGAACGGATTACAAGCAAATAGTTTTCTAGGCTTTGAAAACTATATCC
GTCTATTTCAGGAAGAACACTTTTTAAATGCAATTTGGTTTACAATTAAGTTCGCAGTTGTATCTATTGTTCTTGTAAAT
GTCATCGGTTTAGGGCTTGCATTATTAGTTACACAAAAGTTAAAGACGAGTAATTTATTTAGAACAGTATTCTTTATGCC
TAATTTAATAGGTGGCTTGATTTTAGGTTTTATCTGGCAGTTTATTTTTGTAAGTGCATTCAATAGTGCTGGACAATTAC
TAGGACTGGAATTTTTGCAAGGATGGCTTTCTGATGCTACCACTGGTTTCTGGGGGTTAGTTATTTTAAATGCGTGGCAA
TATGGCGGCTATATTATGATTATATACATTGCCTATCTTGAAGCAGTTCCACAAGAATTAATGGAAGCATCTGAAATTGA
TGGAGCAAATCCTTTTCAACGATTTTGGAAGGTTACATTTCCATTAGTGGCACCTGCATTTACGATCAGTATGTTTTTAA
CATTGTCTAACGCATTCAAAATGTACGATCAAAACCTCGCATTAACCGGAGGAGGACCCTTCAAATCAACGGAAATGATT
GCAATGGATATTTATAATACTGCTTTTAGTGATTATGATATGGCATTTGCTCAAGCAAAAGCTGTTATATTTTTTATACT
AGTGGCAGCTGTAGCTTTGACACAAGTGTATTATAATAAGAAGAGGGAGGTTGACCTATAA

Upstream 100 bases:

>100_bases
GTCATGCTTTTGAGGTAGTAACCTCGGTGAGCAAGAATGAAGACCAAAATACAATGAAGTCTTATTTTATTAGAAGTATT
ACAAAGGAGGGGATTACGTC

Downstream 100 bases:

>100_bases
TGAAAGCGAAAAAAAGAAATAGAATATTATTACTGATTCTAGGTCTAATCCTCATGTTATTGTGGTTATCTCCATTCTAC
TTAATGTTTGTTAATGCATT

Product: multiple sugar-binding transport system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKNRSLSFWLFMTPTLVALGLVVFVPFIYGFVYSFTDWNGLQANSFLGFENYIRLFQEEHFLNAIWFTIKFAVVSIVLVN
VIGLGLALLVTQKLKTSNLFRTVFFMPNLIGGLILGFIWQFIFVSAFNSAGQLLGLEFLQGWLSDATTGFWGLVILNAWQ
YGGYIMIIYIAYLEAVPQELMEASEIDGANPFQRFWKVTFPLVAPAFTISMFLTLSNAFKMYDQNLALTGGGPFKSTEMI
AMDIYNTAFSDYDMAFAQAKAVIFFILVAAVALTQVYYNKKREVDL

Sequences:

>Translated_286_residues
MKNRSLSFWLFMTPTLVALGLVVFVPFIYGFVYSFTDWNGLQANSFLGFENYIRLFQEEHFLNAIWFTIKFAVVSIVLVN
VIGLGLALLVTQKLKTSNLFRTVFFMPNLIGGLILGFIWQFIFVSAFNSAGQLLGLEFLQGWLSDATTGFWGLVILNAWQ
YGGYIMIIYIAYLEAVPQELMEASEIDGANPFQRFWKVTFPLVAPAFTISMFLTLSNAFKMYDQNLALTGGGPFKSTEMI
AMDIYNTAFSDYDMAFAQAKAVIFFILVAAVALTQVYYNKKREVDL
>Mature_286_residues
MKNRSLSFWLFMTPTLVALGLVVFVPFIYGFVYSFTDWNGLQANSFLGFENYIRLFQEEHFLNAIWFTIKFAVVSIVLVN
VIGLGLALLVTQKLKTSNLFRTVFFMPNLIGGLILGFIWQFIFVSAFNSAGQLLGLEFLQGWLSDATTGFWGLVILNAWQ
YGGYIMIIYIAYLEAVPQELMEASEIDGANPFQRFWKVTFPLVAPAFTISMFLTLSNAFKMYDQNLALTGGGPFKSTEMI
AMDIYNTAFSDYDMAFAQAKAVIFFILVAAVALTQVYYNKKREVDL

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=246, Percent_Identity=28.4552845528455, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1790465, Length=253, Percent_Identity=29.6442687747036, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787570, Length=236, Percent_Identity=26.271186440678, Blast_Score=98, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32382; Mature: 32382

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure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EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408 [H]