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The map label for this gene is amyC [H]

Identifier: 23100023

GI number: 23100023

Start: 2626224

End: 2627060

Strand: Reverse

Name: amyC [H]

Synonym: OB2568

Alternate gene names: 23100023

Gene position: 2627060-2626224 (Counterclockwise)

Preceding gene: 23100024

Following gene: 23100022

Centisome position: 72.36

GC content: 31.54

Gene sequence:

>837_bases
ATGAAAGCGAAAAAAAGAAATAGAATATTATTACTGATTCTAGGTCTAATCCTCATGTTATTGTGGTTATCTCCATTCTA
CTTAATGTTTGTTAATGCATTTAAAACGAAGAATGATATTTTTACGAATATCTTAGGGTTTCCTACAGAATGGACATTTG
ACAATTTTATTCAAGCTTTTATAGATTTAGATTTTGCAAACTCACTATTTAACTCCATACTTATTAGTTTATTAAGTGTC
GGAATTATAATAATCTTTTCTTCAATGGCTGGTTACGCACTTGCTAGGAATACAAGTAAATTAAGTGCGTTCTTGTTTAT
GATTTTTGTAGCTGCAATGTTAATTCCATTCCAGTCTGTTATGATTCCACTTGTATCTATCTTTGGTCAAGTTGAAATGC
TAAATCGTTGGGGATTAATATTTATGTATCTTGGATTTGGTTCTAGTCTGTCCATTTTCTTATATCATGGTGCGATGACG
GGAATCTCTAAATCATTAGATGAAGCAGCTACCATTGATGGAGCGAACAAGTGGCAATTATTTTGGAAGATTATTTTCCC
AATGTTAAAGCCAATATCTGTTACTGTAATGATCTTGAACTTAATTTGGATTTGGAATGACTATCTTTTGCCATCTCTCG
TATTAAGTGCGAATGAAGCAACTATTCCATTGAAAATGTTCTTCTTCTTTGGACAATATACGAAACAATGGCATTTAGCA
TTAGCTGGTCTTACTATAGCAATAATTCCAGTCATTATAATTTACTTTATTGCACAGAAACATATTATTAAAGGAGTATC
AGATGGAGCTGTTAAGGTAATCCCTAGAAATAAATGA

Upstream 100 bases:

>100_bases
TGGCATTTGCTCAAGCAAAAGCTGTTATATTTTTTATACTAGTGGCAGCTGTAGCTTTGACACAAGTGTATTATAATAAG
AAGAGGGAGGTTGACCTATA

Downstream 100 bases:

>100_bases
AAGGAGGCTGATTACCGTGTCGGTTACTATAAAAGACGTCGCAAAGGAAGCAAATGTATCGCCTTCTACCGTTTCTCGAG
TTCTTTCTGATAGTGATAAG

Product: multiple sugar-binding transport system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MKAKKRNRILLLILGLILMLLWLSPFYLMFVNAFKTKNDIFTNILGFPTEWTFDNFIQAFIDLDFANSLFNSILISLLSV
GIIIIFSSMAGYALARNTSKLSAFLFMIFVAAMLIPFQSVMIPLVSIFGQVEMLNRWGLIFMYLGFGSSLSIFLYHGAMT
GISKSLDEAATIDGANKWQLFWKIIFPMLKPISVTVMILNLIWIWNDYLLPSLVLSANEATIPLKMFFFFGQYTKQWHLA
LAGLTIAIIPVIIIYFIAQKHIIKGVSDGAVKVIPRNK

Sequences:

>Translated_278_residues
MKAKKRNRILLLILGLILMLLWLSPFYLMFVNAFKTKNDIFTNILGFPTEWTFDNFIQAFIDLDFANSLFNSILISLLSV
GIIIIFSSMAGYALARNTSKLSAFLFMIFVAAMLIPFQSVMIPLVSIFGQVEMLNRWGLIFMYLGFGSSLSIFLYHGAMT
GISKSLDEAATIDGANKWQLFWKIIFPMLKPISVTVMILNLIWIWNDYLLPSLVLSANEATIPLKMFFFFGQYTKQWHLA
LAGLTIAIIPVIIIYFIAQKHIIKGVSDGAVKVIPRNK
>Mature_278_residues
MKAKKRNRILLLILGLILMLLWLSPFYLMFVNAFKTKNDIFTNILGFPTEWTFDNFIQAFIDLDFANSLFNSILISLLSV
GIIIIFSSMAGYALARNTSKLSAFLFMIFVAAMLIPFQSVMIPLVSIFGQVEMLNRWGLIFMYLGFGSSLSIFLYHGAMT
GISKSLDEAATIDGANKWQLFWKIIFPMLKPISVTVMILNLIWIWNDYLLPSLVLSANEATIPLKMFFFFGQYTKQWHLA
LAGLTIAIIPVIIIYFIAQKHIIKGVSDGAVKVIPRNK

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=271, Percent_Identity=25.0922509225092, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1790464, Length=212, Percent_Identity=27.8301886792453, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787571, Length=279, Percent_Identity=24.3727598566308, Blast_Score=74, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31533; Mature: 31533

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKKRNRILLLILGLILMLLWLSPFYLMFVNAFKTKNDIFTNILGFPTEWTFDNFIQAF
CCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
IDLDFANSLFNSILISLLSVGIIIIFSSMAGYALARNTSKLSAFLFMIFVAAMLIPFQSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
MIPLVSIFGQVEMLNRWGLIFMYLGFGSSLSIFLYHGAMTGISKSLDEAATIDGANKWQL
HHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHHHH
FWKIIFPMLKPISVTVMILNLIWIWNDYLLPSLVLSANEATIPLKMFFFFGQYTKQWHLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LAGLTIAIIPVIIIYFIAQKHIIKGVSDGAVKVIPRNK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
>Mature Secondary Structure
MKAKKRNRILLLILGLILMLLWLSPFYLMFVNAFKTKNDIFTNILGFPTEWTFDNFIQAF
CCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
IDLDFANSLFNSILISLLSVGIIIIFSSMAGYALARNTSKLSAFLFMIFVAAMLIPFQSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
MIPLVSIFGQVEMLNRWGLIFMYLGFGSSLSIFLYHGAMTGISKSLDEAATIDGANKWQL
HHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHHHH
FWKIIFPMLKPISVTVMILNLIWIWNDYLLPSLVLSANEATIPLKMFFFFGQYTKQWHLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LAGLTIAIIPVIIIYFIAQKHIIKGVSDGAVKVIPRNK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408; 1854207 [H]