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The map label for this gene is ydcA [H]

Identifier: 229917793

GI number: 229917793

Start: 2023297

End: 2024022

Strand: Reverse

Name: ydcA [H]

Synonym: EAT1b_2071

Alternate gene names: 229917793

Gene position: 2024022-2023297 (Counterclockwise)

Preceding gene: 229917805

Following gene: 229917782

Centisome position: 67.47

GC content: 50.41

Gene sequence:

>726_bases
ATGTTTAGTCGTACGGAAAATGTTCAAACGTTTGTACGGGCATATCCACTCGTAACGCTGTTCATTGTAATCCAACTCCT
TGTGTTTGTCATCGATTCTTTCGCTCCTGGTTTACGAATCGTGGCGACGGGAGGGTCGTTCCATTTGGCACTCGCTGACG
GACAATGGTACCGTTTGGTCACGGCCAACTTCATTCATTTGAGTCTCGGTCACTTGCTGTTCAATTCGTTCGCGCTGATC
ATCTTCGGACCGGCGATGGAACGAATGGTCGGACACGTGAAATTTGCCTTGTTTTATGTATTCGCCGGAGCGCTCGCCAA
CCTGTTCACGTACTTCACTGTCAGCAACTTGTTTTATCTCCAAGCCGGGGCGTCAGGCGCCATCTTGGCCATTCTCGGAT
TCTACGTATTCATCGGTCGTTTCCGTCGCACGTTGATGTACAGCCAAGATGCCCGCTTGGTCTACATCTTCGTCGCCATC
AGTGCCGTTTTCACATTGATTGGTTCGAACGTTTCCCTTTGGGGGCATGTGTACGGATTCTTGGCAGGATTCTTACTTGC
CATCCCACTCTCACGGTTCGCCGTCCCGTATACGCGCCCGATGCGCTATGGGAAGTATAAGCAACGTTCGTACGCGCCAC
CTGTCATTCATTCCGGGGACGGAAAGTGGTTTTTCTACATCATCATCGGACTGGCCATCTTCGGATTATTGGCACAGTTC
TTATAA

Upstream 100 bases:

>100_bases
CAAGCTCGACGATATCGACTCCGATTCCTACAATCACAGGACACTCGCTCCTTTCCTTTTTTCCCCGTTTCCTTATACAA
TTGAGGAAAGAGGTGATGTT

Downstream 100 bases:

>100_bases
CGAAAAGGGTGACACGTGGCGTGTCACCCTTTGTCGTTACGTTAACAATGTCAGCATCAGAGCTTTTTGTGCATGCAGAC
GATTCTCAGCTTGATCGAAC

Product: Rhomboid family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MFSRTENVQTFVRAYPLVTLFIVIQLLVFVIDSFAPGLRIVATGGSFHLALADGQWYRLVTANFIHLSLGHLLFNSFALI
IFGPAMERMVGHVKFALFYVFAGALANLFTYFTVSNLFYLQAGASGAILAILGFYVFIGRFRRTLMYSQDARLVYIFVAI
SAVFTLIGSNVSLWGHVYGFLAGFLLAIPLSRFAVPYTRPMRYGKYKQRSYAPPVIHSGDGKWFFYIIIGLAIFGLLAQF
L

Sequences:

>Translated_241_residues
MFSRTENVQTFVRAYPLVTLFIVIQLLVFVIDSFAPGLRIVATGGSFHLALADGQWYRLVTANFIHLSLGHLLFNSFALI
IFGPAMERMVGHVKFALFYVFAGALANLFTYFTVSNLFYLQAGASGAILAILGFYVFIGRFRRTLMYSQDARLVYIFVAI
SAVFTLIGSNVSLWGHVYGFLAGFLLAIPLSRFAVPYTRPMRYGKYKQRSYAPPVIHSGDGKWFFYIIIGLAIFGLLAQF
L
>Mature_241_residues
MFSRTENVQTFVRAYPLVTLFIVIQLLVFVIDSFAPGLRIVATGGSFHLALADGQWYRLVTANFIHLSLGHLLFNSFALI
IFGPAMERMVGHVKFALFYVFAGALANLFTYFTVSNLFYLQAGASGAILAILGFYVFIGRFRRTLMYSQDARLVYIFVAI
SAVFTLIGSNVSLWGHVYGFLAGFLLAIPLSRFAVPYTRPMRYGKYKQRSYAPPVIHSGDGKWFFYIIIGLAIFGLLAQF
L

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S54 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002610
- InterPro:   IPR022764 [H]

Pfam domain/function: PF01694 Rhomboid [H]

EC number: NA

Molecular weight: Translated: 27040; Mature: 27040

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSRTENVQTFVRAYPLVTLFIVIQLLVFVIDSFAPGLRIVATGGSFHLALADGQWYRLV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEECCCEEEHH
TANFIHLSLGHLLFNSFALIIFGPAMERMVGHVKFALFYVFAGALANLFTYFTVSNLFYL
HHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
QAGASGAILAILGFYVFIGRFRRTLMYSQDARLVYIFVAISAVFTLIGSNVSLWGHVYGF
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LAGFLLAIPLSRFAVPYTRPMRYGKYKQRSYAPPVIHSGDGKWFFYIIIGLAIFGLLAQF
HHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH
L
C
>Mature Secondary Structure
MFSRTENVQTFVRAYPLVTLFIVIQLLVFVIDSFAPGLRIVATGGSFHLALADGQWYRLV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEECCCEEEHH
TANFIHLSLGHLLFNSFALIIFGPAMERMVGHVKFALFYVFAGALANLFTYFTVSNLFYL
HHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
QAGASGAILAILGFYVFIGRFRRTLMYSQDARLVYIFVAISAVFTLIGSNVSLWGHVYGF
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LAGFLLAIPLSRFAVPYTRPMRYGKYKQRSYAPPVIHSGDGKWFFYIIIGLAIFGLLAQF
HHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]