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The map label for this gene is ydiK [C]

Identifier: 227080805

GI number: 227080805

Start: 620375

End: 621460

Strand: Reverse

Name: ydiK [C]

Synonym: VCM66_0582

Alternate gene names: 227080805

Gene position: 621460-620375 (Counterclockwise)

Preceding gene: 227080807

Following gene: 227080804

Centisome position: 21.49

GC content: 46.78

Gene sequence:

>1086_bases
GTGTCAGAAAAAATCAAATTAGCATCCAGTCATCGCGTATTAGTTGTGGCGCTGCTCGCTTCTGCACTCGCGTGTTACTG
GTTGGTCGAGCCTTACATCAACTCGATAATAATGGCCTTCATCATTTCGCTCTTAATGTTTCCAATCCATGATTGGTTTG
AAAAGAAACTGCCTTCACACAACAATTTAGCGGCCTTTTTATCTTGTGTTGTGCTAACCGTTATCATCGTTATTCCCCTA
CTGTTTATTTTTGGGGCCATCGTTCAACAAGGCTCTAAGTTCTCACAAAACCTCTACGCATGGGTTACACAAGGCGGAAT
TCAGGCTCTCTTTAACCATCCTTGGGTGGTCAAAGGGCTCAGCTTAGCCAATCACTATCTGCCTTTTGAAGAGATCAGCC
CCCAACAAATCGCACAACGCATTGGTCAGTTTGCAACCACATTCGGCAGTAATTTAGTCAGTATTAGCGCAAAAATTCTC
GGGGATGCCACCAGCTTCGTGATGCATTTTTTCCTGATGCTGTTTGTGCTGTTCTTCCTACTGCGCGATCACGACAAAAT
CATCAGTGCGATTCGCCATATTCTGCCCCTCTCTCGCAGCCAAGAAGATCGCCTGCTCAGCGAGATAGAAAATGTCTCCA
AATCAGCGGTGATGGGCTCTTTTTTAACCGCCATCGCGCAAGGTGTGGCAGGCGGAATTGGCATGTGGCTGGCGGGTTTC
CCGGGACTGTTTTGGGGAACCATGATGGGCTTTGCGTCCTTTATCCCCGTCGTCGGTACTGCGTTAATTTGGATCCCTGC
GACACTCTATCTATTTTTAACCGGTGATACGACTTGGGCGATTTTCCTCGCCATTTGGAGTGTTGCGGTTGTGGGCTCGA
TTGATAACTTACTCCGCCCCTTCTTAATGCAAGGCAGTGCAGGGATGAATACCTTGATGATTTTCTTCTCCCTGCTCGGC
GGTATTCAGTTGTTTGGTTTAATTGGCTTAATTTATGGCCCGCTGATTTTTGCCATCACCATGGTGCTGTTTAATATCTA
CGAAGAAGAGTTTCGCAGCTTTTTAGATCAGCAAGACCGAAGCTAA

Upstream 100 bases:

>100_bases
ATTCATTTTTATCACAACAGCCCATCTCGACCTCCGGATTGCTAAGCAGCTGAATTGGCGTCATTATAACGCTTCAAATT
CCTTTAGGTGGACAACTCCT

Downstream 100 bases:

>100_bases
GTCCAAGTTAGGGTTTCATTCAAGGGGCAGAGTGTGCGAAAATCTGCCCCCTTTTCTTGAGTAGAGCGTGTCATGCAACC
TTATACTGCCCCGAGTGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MSEKIKLASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVVLTVIIVIPL
LFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANHYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKIL
GDATSFVMHFFLMLFVLFFLLRDHDKIISAIRHILPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGF
PGLFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQGSAGMNTLMIFFSLLG
GIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDRS

Sequences:

>Translated_361_residues
MSEKIKLASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVVLTVIIVIPL
LFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANHYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKIL
GDATSFVMHFFLMLFVLFFLLRDHDKIISAIRHILPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGF
PGLFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQGSAGMNTLMIFFSLLG
GIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDRS
>Mature_360_residues
SEKIKLASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVVLTVIIVIPLL
FIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANHYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILG
DATSFVMHFFLMLFVLFFLLRDHDKIISAIRHILPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFP
GLFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQGSAGMNTLMIFFSLLGG
IQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDRS

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=340, Percent_Identity=26.7647058823529, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788838, Length=303, Percent_Identity=24.4224422442244, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 40048; Mature: 39917

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKIKLASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSH
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NNLAAFLSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
SLANHYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFL
HHHHHCCCHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRDHDKIISAIRHILPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGF
HHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGLFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FLMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDR
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
S
C
>Mature Secondary Structure 
SEKIKLASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSH
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NNLAAFLSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
SLANHYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFL
HHHHHCCCHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRDHDKIISAIRHILPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGF
HHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGLFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FLMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDR
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]