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The map label for this gene is rsmC

Identifier: 227080804

GI number: 227080804

Start: 619280

End: 620302

Strand: Reverse

Name: rsmC

Synonym: VCM66_0581

Alternate gene names: 227080804

Gene position: 620302-619280 (Counterclockwise)

Preceding gene: 227080805

Following gene: 227080803

Centisome position: 21.45

GC content: 47.9

Gene sequence:

>1023_bases
ATGCAACCTTATACTGCCCCGAGTGAAATCGCCCTTCGTCAACTCGACTATTTTGCTGATAAGCATGTGTTGGTCGCGGG
CGAAGTTGAAGATCGTTTTCCTATCGAACTTCGTCAATATTGCGCTTCCGTTTCGGTGTTTACCACGCACTACGGCTACT
ACTCTCAGCTCAAAGCTTACCCTGAGATTACTCGCTACTTTGGTGAGCAATTAACAGCAGATCTCAATGCTGATCTGATT
TTGCTTTACTGGCCTAAAGCCAAGCAAGAAGCGGAATACTTACTCGCGATGCTGCTGGCAAAGCTCGGTACAGGCACTGA
AATTGTGGTGGTCGGTGAAAACCGCTCTGGGGTGAAGAGCATTGAAAAAATGTTCGCCGCTTATGGCCCAATCCACAAAT
ACGACTCTGCACGCCGCTGCTCATTTTATTGGGGACACTGTGTTCATACTCCAGCCGCTTTTGATATTGAGCAATGGTTT
AAATCTTACGCGGTAGACTATCAAGGTCATGAGCTGACGATCCGCAGCTTACCGGGAGTTTTTAGCCATGGCGAATTTGA
TCTGGGAAGTCGCTTACTGCTCGATACCTTACCCCCCCTGAGTGGTAAGGTAATCGATATTGGCAGTGGTGCCGGTGTTT
TGGGCTGTGTGATGGCAAAACTCAACCCTCATATTGAGTTAGAGATGACAGACATCAGCGCTCTGGCGATTCGCTCTAGC
CAAGAAACCCTAGTGGCTAACCAACTGCACGGCCACGTTTATCCATCCGATATGTTTTCCGACACCGGGCATCACTACAA
CTATATTGTGACCAATCCACCATTCCATTCGGGATTGGAGACCAGCTATAGCGCCACAGAGCGTCTTCTTGCCGAATCTG
TAGATCATCTTGCTTCGGGAGGCTCCATCTGGGTGGTGGCAAACAGCTTTTTGAAATATCCGCCAATTCTTGAGCAAGCG
TTTGGTCACTGCGATATCGCCGCTAAAACCAATAAATTTGCCATCTATCACGCAAAAAAATAA

Upstream 100 bases:

>100_bases
CTTTTTAGATCAGCAAGACCGAAGCTAAGTCCAAGTTAGGGTTTCATTCAAGGGGCAGAGTGTGCGAAAATCTGCCCCCT
TTTCTTGAGTAGAGCGTGTC

Downstream 100 bases:

>100_bases
CTCGTTACATTTTGCCGCTTTTAACGTAAATCAGCCTCAAAAGCGGCATTCTCCTCACGTTTTTTGCGTCTATGCCCACG
CTTTAGCTTGGACTTACTTG

Product: Ribosomal RNA small subunit methyltransferase C

Products: NA

Alternate protein names: 16S rRNA m2G1207 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase rsmC

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MQPYTAPSEIALRQLDYFADKHVLVAGEVEDRFPIELRQYCASVSVFTTHYGYYSQLKAYPEITRYFGEQLTADLNADLI
LLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGVKSIEKMFAAYGPIHKYDSARRCSFYWGHCVHTPAAFDIEQWF
KSYAVDYQGHELTIRSLPGVFSHGEFDLGSRLLLDTLPPLSGKVIDIGSGAGVLGCVMAKLNPHIELEMTDISALAIRSS
QETLVANQLHGHVYPSDMFSDTGHHYNYIVTNPPFHSGLETSYSATERLLAESVDHLASGGSIWVVANSFLKYPPILEQA
FGHCDIAAKTNKFAIYHAKK

Sequences:

>Translated_340_residues
MQPYTAPSEIALRQLDYFADKHVLVAGEVEDRFPIELRQYCASVSVFTTHYGYYSQLKAYPEITRYFGEQLTADLNADLI
LLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGVKSIEKMFAAYGPIHKYDSARRCSFYWGHCVHTPAAFDIEQWF
KSYAVDYQGHELTIRSLPGVFSHGEFDLGSRLLLDTLPPLSGKVIDIGSGAGVLGCVMAKLNPHIELEMTDISALAIRSS
QETLVANQLHGHVYPSDMFSDTGHHYNYIVTNPPFHSGLETSYSATERLLAESVDHLASGGSIWVVANSFLKYPPILEQA
FGHCDIAAKTNKFAIYHAKK
>Mature_340_residues
MQPYTAPSEIALRQLDYFADKHVLVAGEVEDRFPIELRQYCASVSVFTTHYGYYSQLKAYPEITRYFGEQLTADLNADLI
LLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGVKSIEKMFAAYGPIHKYDSARRCSFYWGHCVHTPAAFDIEQWF
KSYAVDYQGHELTIRSLPGVFSHGEFDLGSRLLLDTLPPLSGKVIDIGSGAGVLGCVMAKLNPHIELEMTDISALAIRSS
QETLVANQLHGHVYPSDMFSDTGHHYNYIVTNPPFHSGLETSYSATERLLAESVDHLASGGSIWVVANSFLKYPPILEQA
FGHCDIAAKTNKFAIYHAKK

Specific function: Specifically methylates the guanosine in position 1207 of 16S rRNA in the 30S particle

COG id: COG2813

COG function: function code J; 16S RNA G1207 methylase RsmC

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmC family

Homologues:

Organism=Escherichia coli, GI1790830, Length=341, Percent_Identity=42.2287390029325, Blast_Score=276, Evalue=2e-75,
Organism=Escherichia coli, GI87082206, Length=274, Percent_Identity=24.8175182481752, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RSMC_VIBC3 (A5F942)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F942
- SMR:   A5F942
- STRING:   A5F942
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A0151
- eggNOG:   COG2813
- HOGENOM:   HBG296757
- OMA:   TGKFKVY
- ProtClustDB:   CLSK874045
- BioCyc:   VCHO345073:VC0395_A0151-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01862
- InterPro:   IPR002052
- InterPro:   IPR013675
- InterPro:   IPR007848

Pfam domain/function: PF05175 MTS; PF08468 MTS_N

EC number: =2.1.1.172

Molecular weight: Translated: 37911; Mature: 37911

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPYTAPSEIALRQLDYFADKHVLVAGEVEDRFPIELRQYCASVSVFTTHYGYYSQLKAY
CCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
PEITRYFGEQLTADLNADLILLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGVKS
HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
IEKMFAAYGPIHKYDSARRCSFYWGHCVHTPAAFDIEQWFKSYAVDYQGHELTIRSLPGV
HHHHHHHHCCHHHCCCCCCCEEEECHHCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCC
FSHGEFDLGSRLLLDTLPPLSGKVIDIGSGAGVLGCVMAKLNPHIELEMTDISALAIRSS
CCCCCCCCCCCHHHHCCCCCCCCEEEECCCCHHHHHHHHHCCCCEEEEEECCEEEEECCC
QETLVANQLHGHVYPSDMFSDTGHHYNYIVTNPPFHSGLETSYSATERLLAESVDHLASG
CHHHHHHHHCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC
GSIWVVANSFLKYPPILEQAFGHCDIAAKTNKFAIYHAKK
CEEEEEECCHHCCCCHHHHHCCCCEEEECCCEEEEEEECC
>Mature Secondary Structure
MQPYTAPSEIALRQLDYFADKHVLVAGEVEDRFPIELRQYCASVSVFTTHYGYYSQLKAY
CCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
PEITRYFGEQLTADLNADLILLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGVKS
HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
IEKMFAAYGPIHKYDSARRCSFYWGHCVHTPAAFDIEQWFKSYAVDYQGHELTIRSLPGV
HHHHHHHHCCHHHCCCCCCCEEEECHHCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCC
FSHGEFDLGSRLLLDTLPPLSGKVIDIGSGAGVLGCVMAKLNPHIELEMTDISALAIRSS
CCCCCCCCCCCHHHHCCCCCCCCEEEECCCCHHHHHHHHHCCCCEEEEEECCEEEEECCC
QETLVANQLHGHVYPSDMFSDTGHHYNYIVTNPPFHSGLETSYSATERLLAESVDHLASG
CHHHHHHHHCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC
GSIWVVANSFLKYPPILEQAFGHCDIAAKTNKFAIYHAKK
CEEEEEECCHHCCCCHHHHHCCCCEEEECCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA