| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is 227080796
Identifier: 227080796
GI number: 227080796
Start: 607113
End: 608837
Strand: Reverse
Name: 227080796
Synonym: VCM66_0573
Alternate gene names: NA
Gene position: 608837-607113 (Counterclockwise)
Preceding gene: 227080797
Following gene: 227080795
Centisome position: 21.05
GC content: 50.14
Gene sequence:
>1725_bases ATGCTGTTACTGACCAACCACATTGGCTATGAAACCCAAGGCCCTAAACAGGCGGTGTTGCTGTGTGGACAAACACAACT CATGGACGATTGTGTGCTTTTGGTTTGCGCTCGTAGTCACCAAACCGTTGCCAAGCTCGCTATTGAGTGGCACGGCAAGG TCGACAACTGGCATCAGGGACAATTTCATCGTATCGATTTTTCCGATTTCACGACGCCAGGCGACTATTATCTGCGCCTG GAACACACGCATTCTGCCACTTTTACTATTGCGCGAGGCGTATTAATGCAACGCACATTTTCTGATGTGCTGCACTACTT TAAATCGCAACGCTGCTCTGGGCAGTTTGATCAACAAGACAAGCAAGTACCGCTGCTGAGCACATCAACCACTGCCGATG TGCACGGTGGCTGGTACGACGCTTCAGGTGACGTTAGCAAGTATCTCAGTCACCTTTCTTACGCTAACTATTTGAACCCA CAACAAACACCTTTGGTGGTCTGGAACATGCTCAAAGGGTTAGCGGTTTTACAACATCACTCGGGTTTTGCATCGTTTTC TCGCACTCGCCTCAAGGATGAAGCGTTGTTTGGTGCTGATTTTCTACGCCGTATGCAAAACTCCGAGGGATTTTTTTATA TGACCGTCTTTGACAAATGGAGCAAAGACACCAAACAACGGGAGATTTGTGCCTACGCGACCCAACAAGGCCATAAATCC GATGATTATCAAGCGGGTTTTCGCCAAGGTGGGGGCATGGCGATTGCGGCACTTGCCGCAGCCGCGCGTTTGGATACGCA CGGCGAGTTCACACAAGCTGACTATTTACAAGCGGCAGAAAATGGCTACTGGCACCTCAAAGAGCATAACCTCGCCTACC TCAATGATGGGGTTGAAAACATCATTGATGAGTACTGCGCACTCTTGGCGTGTTGCGAACTTTACCGCACGACAGAGAAT GACCAATATCTGGCTCAAGCTCGTGAGTGGGCACAGCGTTTAGCCAAGCGCCAATGCAGCGATGAACAAATTGCGCACTA CTGGTCTGCCACCAGCAACGGTGAGCGCCCATACTTCCACGCCAGTGATGCTGGTCTGCCTGTCATTGCACTTTGCGAGT ATCTGAATATTGAAACGGATACGGCTAACTACGCTCAACTCCAAAGAGTGGTCGAGCAAGCCTGTCAATTCGAGTTAGCG ATAACTCAACAAGTCTCCAACCCGTTTGGGTACCCGCGTCAGTATGTCAAAGGGGTGGAAAGCGCCAAACGCACCAGTTT CTTTATCGCCCAAGACAACGAAAGTGGTTACTGGTGGCAAGGTGAAAATGCCCGTCTCGCCTCGTTGGCGAGCATGGCCT ATCTTGCTCAGCCTCATTTGAGTACCGCTATCGCTAAACCGCTTGAACAGTGGTCACAAAATGCCCTGAACTGGATTGTC GGGCTCAATCCTTACAACATGTGCATGCTCGATGGACATGGGCACAATAATCCCGATTACTTACCTCATTTAGGCTTTTT CAATGCCAAAGGCGGTGTGTGTAACGGCATAACCGCGGGCTTTGATGACCCAAGAGATATCGCGTTTAACCCAGCAGGGC AAAAAGATGACATGCTGCAAAACTGGCGTTGGGGAGAACAATGGATCCCGCATGGCGCTTGGTATCTGCTTGCCATCATC AGCCAATTTGCTCACTTTACCGCTCACGGGGAGGAGAACCAATGA
Upstream 100 bases:
>100_bases TGTCTGACAACCACTTTGTTCGTTGTTATCTGTTTGAAAAATAAAACCAGCAGCTCCCTCTCGTAGGGAGCTTGCTCAAT CCATACTGCGGAGAAAATGA
Downstream 100 bases:
>100_bases ACTACTACGTAGGCATTGATGGCGGCGGTACATCCTGCCGTGCTCGCATTCGTAATCAGCAAGGTGAATGGGTTGGCGAA GCCAAAAGTGGCAGCGCCAA
Product: endoglucanase-related protein
Products: NA
Alternate protein names: Endoglucanase-Related Protein; Endoglucanase-Like Protein; Chitobiase; Glycoside Hydrolase Family Protein; Endoglucanase; Glucosamine-Link Cellobiase; Beta-Glycosidase-Like Protein; Glycosy Hydrolase Family Protein
Number of amino acids: Translated: 574; Mature: 574
Protein sequence:
>574_residues MLLLTNHIGYETQGPKQAVLLCGQTQLMDDCVLLVCARSHQTVAKLAIEWHGKVDNWHQGQFHRIDFSDFTTPGDYYLRL EHTHSATFTIARGVLMQRTFSDVLHYFKSQRCSGQFDQQDKQVPLLSTSTTADVHGGWYDASGDVSKYLSHLSYANYLNP QQTPLVVWNMLKGLAVLQHHSGFASFSRTRLKDEALFGADFLRRMQNSEGFFYMTVFDKWSKDTKQREICAYATQQGHKS DDYQAGFRQGGGMAIAALAAAARLDTHGEFTQADYLQAAENGYWHLKEHNLAYLNDGVENIIDEYCALLACCELYRTTEN DQYLAQAREWAQRLAKRQCSDEQIAHYWSATSNGERPYFHASDAGLPVIALCEYLNIETDTANYAQLQRVVEQACQFELA ITQQVSNPFGYPRQYVKGVESAKRTSFFIAQDNESGYWWQGENARLASLASMAYLAQPHLSTAIAKPLEQWSQNALNWIV GLNPYNMCMLDGHGHNNPDYLPHLGFFNAKGGVCNGITAGFDDPRDIAFNPAGQKDDMLQNWRWGEQWIPHGAWYLLAII SQFAHFTAHGEENQ
Sequences:
>Translated_574_residues MLLLTNHIGYETQGPKQAVLLCGQTQLMDDCVLLVCARSHQTVAKLAIEWHGKVDNWHQGQFHRIDFSDFTTPGDYYLRL EHTHSATFTIARGVLMQRTFSDVLHYFKSQRCSGQFDQQDKQVPLLSTSTTADVHGGWYDASGDVSKYLSHLSYANYLNP QQTPLVVWNMLKGLAVLQHHSGFASFSRTRLKDEALFGADFLRRMQNSEGFFYMTVFDKWSKDTKQREICAYATQQGHKS DDYQAGFRQGGGMAIAALAAAARLDTHGEFTQADYLQAAENGYWHLKEHNLAYLNDGVENIIDEYCALLACCELYRTTEN DQYLAQAREWAQRLAKRQCSDEQIAHYWSATSNGERPYFHASDAGLPVIALCEYLNIETDTANYAQLQRVVEQACQFELA ITQQVSNPFGYPRQYVKGVESAKRTSFFIAQDNESGYWWQGENARLASLASMAYLAQPHLSTAIAKPLEQWSQNALNWIV GLNPYNMCMLDGHGHNNPDYLPHLGFFNAKGGVCNGITAGFDDPRDIAFNPAGQKDDMLQNWRWGEQWIPHGAWYLLAII SQFAHFTAHGEENQ >Mature_574_residues MLLLTNHIGYETQGPKQAVLLCGQTQLMDDCVLLVCARSHQTVAKLAIEWHGKVDNWHQGQFHRIDFSDFTTPGDYYLRL EHTHSATFTIARGVLMQRTFSDVLHYFKSQRCSGQFDQQDKQVPLLSTSTTADVHGGWYDASGDVSKYLSHLSYANYLNP QQTPLVVWNMLKGLAVLQHHSGFASFSRTRLKDEALFGADFLRRMQNSEGFFYMTVFDKWSKDTKQREICAYATQQGHKS DDYQAGFRQGGGMAIAALAAAARLDTHGEFTQADYLQAAENGYWHLKEHNLAYLNDGVENIIDEYCALLACCELYRTTEN DQYLAQAREWAQRLAKRQCSDEQIAHYWSATSNGERPYFHASDAGLPVIALCEYLNIETDTANYAQLQRVVEQACQFELA ITQQVSNPFGYPRQYVKGVESAKRTSFFIAQDNESGYWWQGENARLASLASMAYLAQPHLSTAIAKPLEQWSQNALNWIV GLNPYNMCMLDGHGHNNPDYLPHLGFFNAKGGVCNGITAGFDDPRDIAFNPAGQKDDMLQNWRWGEQWIPHGAWYLLAII SQFAHFTAHGEENQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65066; Mature: 65066
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLLTNHIGYETQGPKQAVLLCGQTQLMDDCVLLVCARSHQTVAKLAIEWHGKVDNWHQG CEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC QFHRIDFSDFTTPGDYYLRLEHTHSATFTIARGVLMQRTFSDVLHYFKSQRCSGQFDQQD CEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC KQVPLLSTSTTADVHGGWYDASGDVSKYLSHLSYANYLNPQQTPLVVWNMLKGLAVLQHH CCCCEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC SGFASFSRTRLKDEALFGADFLRRMQNSEGFFYMTVFDKWSKDTKQREICAYATQQGHKS CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCC DDYQAGFRQGGGMAIAALAAAARLDTHGEFTQADYLQAAENGYWHLKEHNLAYLNDGVEN CCHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCEEHHHCCHHH IIDEYCALLACCELYRTTENDQYLAQAREWAQRLAKRQCSDEQIAHYWSATSNGERPYFH HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEE ASDAGLPVIALCEYLNIETDTANYAQLQRVVEQACQFELAITQQVSNPFGYPRQYVKGVE CCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH SAKRTSFFIAQDNESGYWWQGENARLASLASMAYLAQPHLSTAIAKPLEQWSQNALNWIV HHHHCEEEEEECCCCCCEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEE GLNPYNMCMLDGHGHNNPDYLPHLGFFNAKGGVCNGITAGFDDPRDIAFNPAGQKDDMLQ ECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH NWRWGEQWIPHGAWYLLAIISQFAHFTAHGEENQ CCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MLLLTNHIGYETQGPKQAVLLCGQTQLMDDCVLLVCARSHQTVAKLAIEWHGKVDNWHQG CEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC QFHRIDFSDFTTPGDYYLRLEHTHSATFTIARGVLMQRTFSDVLHYFKSQRCSGQFDQQD CEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC KQVPLLSTSTTADVHGGWYDASGDVSKYLSHLSYANYLNPQQTPLVVWNMLKGLAVLQHH CCCCEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC SGFASFSRTRLKDEALFGADFLRRMQNSEGFFYMTVFDKWSKDTKQREICAYATQQGHKS CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCC DDYQAGFRQGGGMAIAALAAAARLDTHGEFTQADYLQAAENGYWHLKEHNLAYLNDGVEN CCHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCEEHHHCCHHH IIDEYCALLACCELYRTTENDQYLAQAREWAQRLAKRQCSDEQIAHYWSATSNGERPYFH HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEE ASDAGLPVIALCEYLNIETDTANYAQLQRVVEQACQFELAITQQVSNPFGYPRQYVKGVE CCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH SAKRTSFFIAQDNESGYWWQGENARLASLASMAYLAQPHLSTAIAKPLEQWSQNALNWIV HHHHCEEEEEECCCCCCEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEE GLNPYNMCMLDGHGHNNPDYLPHLGFFNAKGGVCNGITAGFDDPRDIAFNPAGQKDDMLQ ECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH NWRWGEQWIPHGAWYLLAIISQFAHFTAHGEENQ CCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA