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The map label for this gene is ndvB [H]

Identifier: 227080793

GI number: 227080793

Start: 601798

End: 604203

Strand: Reverse

Name: ndvB [H]

Synonym: VCM66_0570

Alternate gene names: 227080793

Gene position: 604203-601798 (Counterclockwise)

Preceding gene: 227080794

Following gene: 227080792

Centisome position: 20.89

GC content: 50.5

Gene sequence:

>2406_bases
ATGAAATACGGCTATTTCGATAATGATAATCGTGAATACGTCATCACTCGCCCTGACGTACCCGCACCTTGGACTAACTA
TCTCGGTACTGAAAAATTCTGTACGGTGATTTCACACAACGCAGGGGGTTACTCCTTCTATCACTCACCTGAGTACAACC
GCGTGACCAAGTTTCGTCCAAACTTTACCCAAGATCGTCCCGGGCACTATGTTTACCTGCGCGATGATGCGACAGGCGAT
TTCTGGTCTATCTCTTGGCAACCCGTTGCGAAAAGCCTTGAACAAGCGAAATACGAAGTTCGCCACGGCTTGTCCTACTC
AAAATTCAAGTGTGAATACAACGGCATTCACGCCACCAAAACTCTGTTTGTTCCTAAAGGCGAAGATGCCGAAGTTTGGG
ATGTAGTGATCGAAAATACCTCCAACGAAGTGCGCACCATCAGTGCGTTCAACTATGTTGAGTTCTCTTTCAGCCACATC
AAGTCAGACAACCAAAACCATCAGATGTCGCTCTACTCTGCGGGAACAGCGTTCAAAGATGGCGTGATTGAGTATGACCT
GTACTACAACACCGATGATTTCCTCGGTTTCTACTACCTGACTGCAACTTTCGATGCCGACAGCTACGATGGCCAACGTG
ACCAATTCCTTGGCATGTACCGCGATGAAGCCAACCCAATCGCCGTGGCGCAAGGTAAGTGCTCTAACAGTGCGCAAACC
TGTTACAACCACTGTGGTGCACTGCATAAGCAATTCGTGCTGCAACCGGGCGAGAAAGTGCGCTTTGCGGTGATCTTAGG
TGTAGGTAAAGGCAACGGCGCAAAACTGCGTGAAAAATACCAAGACCTGAGCAAAGTGGATTCGGCCTTTGCAGGTATCA
AAGCACACTGGGATGAGCGTTGTGCGAAATTCCAAGTGAAATCACCCAACCAAGGTCTCGATACCATGATCAACGCTTGG
ACTCTGTACCAAGCGGAAACGTGTGTGGTGTGGTCCCGTTTCGCCTCTTTCATTGAAGTCGGCGGCCGTACAGGTCTTGG
CTACCGTGATACTGCGCAAGATGCGATCTCCGTACCACACACTAACCCAGCGATGACTCGTAAGCGCCTCGTTGACCTAC
TGCGTGGTCAAGTGAAAGCCGGTTACGGTCTGCACCTGTTTGATCCTGACTGGTTCGATCCAGAAAAAGCGGATGTTAAA
CCGTCTAAATCACCGACAGTGGTACCAACCCCATCGGATGAAGATAAGATCCACGGCATTAAAGATACCTGTTCTGACGA
TCACCTGTGGATTGTGCCAACCATCCTCAACTATGTGAAAGAGACCGGTGACTTCGCCTTTATCGACGAAGTGATCCCTT
ACGCGGATGGCGGCAACGCCACTGTGTACGAGCACATGATGGCAGCGCTAGATTTCTCTGCAGAATATGTGGGTCAAACC
GGTATCTGTAAGGGTCTGCGTGCCGACTGGAACGACTGTTTGAACCTCGGTGGTGGTGAGTCCTCTATGGTCTCTTTCCT
ACACTTCTGGGCGTTGGAATCTTTCCTTGAACTGTCACGCTATCGCAATGATGAAGCGGCAACCGACAAGTACCAAGCGA
TGGCCGATGGTGTACGCGAAGCGTGTGAAACTCACTTGTGGGATGAACAAGGCGAATGGTACATCCGTGGCCTGACCAAA
AATGGCGACAAGATCGGAACCTTCGAACAAGTGGAAGGCAAAGTGCATTTAGAGTCTAACTCGCTTGCAGTGTTGTCTGG
CACGGTTAGCCATGAACGCGGCATCAAAGCAATGGATGCGGTCTACAAATACCTGTTCTCCAAATACGGTCTACACCTGA
ACGCTCCATCATTTGCCACGCCAAATGATGACATCGGTTTCGTGACTCGCGTTTACCAAGGCGTGAAAGAGAACGGCGCG
ATCTTCTCGCATCCAAACCCATGGGCATGGGTAGCCGAAGCGAAACTGGGCCGTGGTGATCGTGCGATGGAGCTGTATGA
CGCACTCAACCCATACAACCAAAACGACATCATCGAAACCCGTATTGCTGAACCTTACTCTTACGTACAGTTCATCATGG
GGCGTGACCACCAAGATCACGGCCGCGCTAACCACCCATGGTTAACCGGTACTTCTGGCTGGGCATACCATGCGACCACC
AACTATATCTTGGGTATCAAAGCGGGCTTCGATGCACTGGAGATCGATCCTTGTATCCCAACGTCATGGCCGGGTTTTGA
AGTGACTCGCGAATGGCGTGATGCGACTTATCAGATCAAAGTGGAAAACCCGCAAGGCGTTTCAAAAGGCGTGAAATCCA
TCACCCTGAATGGTCAAGCGATTGAAGGTGCCGTTCCTGTGCAAGCCGCAGGCAGCGTTAACCAAGTCGTGGTTGTTCTA
GGTTAA

Upstream 100 bases:

>100_bases
TCTTCCGGAAATCGTAACGACGGCGTGACGGAACTCACGCTGGTTTTCACTAGCAAAATTTTTAGCTGCCATAGGGCAGC
TGGTTTAAAAGGAAAGCACA

Downstream 100 bases:

>100_bases
TCCATTTTCGGGCACTCGCTGAGTGCCCGTTTGCTAATACCTAAGCGTTTTATATGCCCAGACCACTTGTCGTTGCAACC
AAGACTCTTGCAGCGTCAGT

Product: putative cellobiose/cellodextrin-phosphorylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 801; Mature: 801

Protein sequence:

>801_residues
MKYGYFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYHSPEYNRVTKFRPNFTQDRPGHYVYLRDDATGD
FWSISWQPVAKSLEQAKYEVRHGLSYSKFKCEYNGIHATKTLFVPKGEDAEVWDVVIENTSNEVRTISAFNYVEFSFSHI
KSDNQNHQMSLYSAGTAFKDGVIEYDLYYNTDDFLGFYYLTATFDADSYDGQRDQFLGMYRDEANPIAVAQGKCSNSAQT
CYNHCGALHKQFVLQPGEKVRFAVILGVGKGNGAKLREKYQDLSKVDSAFAGIKAHWDERCAKFQVKSPNQGLDTMINAW
TLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPHTNPAMTRKRLVDLLRGQVKAGYGLHLFDPDWFDPEKADVK
PSKSPTVVPTPSDEDKIHGIKDTCSDDHLWIVPTILNYVKETGDFAFIDEVIPYADGGNATVYEHMMAALDFSAEYVGQT
GICKGLRADWNDCLNLGGGESSMVSFLHFWALESFLELSRYRNDEAATDKYQAMADGVREACETHLWDEQGEWYIRGLTK
NGDKIGTFEQVEGKVHLESNSLAVLSGTVSHERGIKAMDAVYKYLFSKYGLHLNAPSFATPNDDIGFVTRVYQGVKENGA
IFSHPNPWAWVAEAKLGRGDRAMELYDALNPYNQNDIIETRIAEPYSYVQFIMGRDHQDHGRANHPWLTGTSGWAYHATT
NYILGIKAGFDALEIDPCIPTSWPGFEVTREWRDATYQIKVENPQGVSKGVKSITLNGQAIEGAVPVQAAGSVNQVVVVL
G

Sequences:

>Translated_801_residues
MKYGYFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYHSPEYNRVTKFRPNFTQDRPGHYVYLRDDATGD
FWSISWQPVAKSLEQAKYEVRHGLSYSKFKCEYNGIHATKTLFVPKGEDAEVWDVVIENTSNEVRTISAFNYVEFSFSHI
KSDNQNHQMSLYSAGTAFKDGVIEYDLYYNTDDFLGFYYLTATFDADSYDGQRDQFLGMYRDEANPIAVAQGKCSNSAQT
CYNHCGALHKQFVLQPGEKVRFAVILGVGKGNGAKLREKYQDLSKVDSAFAGIKAHWDERCAKFQVKSPNQGLDTMINAW
TLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPHTNPAMTRKRLVDLLRGQVKAGYGLHLFDPDWFDPEKADVK
PSKSPTVVPTPSDEDKIHGIKDTCSDDHLWIVPTILNYVKETGDFAFIDEVIPYADGGNATVYEHMMAALDFSAEYVGQT
GICKGLRADWNDCLNLGGGESSMVSFLHFWALESFLELSRYRNDEAATDKYQAMADGVREACETHLWDEQGEWYIRGLTK
NGDKIGTFEQVEGKVHLESNSLAVLSGTVSHERGIKAMDAVYKYLFSKYGLHLNAPSFATPNDDIGFVTRVYQGVKENGA
IFSHPNPWAWVAEAKLGRGDRAMELYDALNPYNQNDIIETRIAEPYSYVQFIMGRDHQDHGRANHPWLTGTSGWAYHATT
NYILGIKAGFDALEIDPCIPTSWPGFEVTREWRDATYQIKVENPQGVSKGVKSITLNGQAIEGAVPVQAAGSVNQVVVVL
G
>Mature_801_residues
MKYGYFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYHSPEYNRVTKFRPNFTQDRPGHYVYLRDDATGD
FWSISWQPVAKSLEQAKYEVRHGLSYSKFKCEYNGIHATKTLFVPKGEDAEVWDVVIENTSNEVRTISAFNYVEFSFSHI
KSDNQNHQMSLYSAGTAFKDGVIEYDLYYNTDDFLGFYYLTATFDADSYDGQRDQFLGMYRDEANPIAVAQGKCSNSAQT
CYNHCGALHKQFVLQPGEKVRFAVILGVGKGNGAKLREKYQDLSKVDSAFAGIKAHWDERCAKFQVKSPNQGLDTMINAW
TLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPHTNPAMTRKRLVDLLRGQVKAGYGLHLFDPDWFDPEKADVK
PSKSPTVVPTPSDEDKIHGIKDTCSDDHLWIVPTILNYVKETGDFAFIDEVIPYADGGNATVYEHMMAALDFSAEYVGQT
GICKGLRADWNDCLNLGGGESSMVSFLHFWALESFLELSRYRNDEAATDKYQAMADGVREACETHLWDEQGEWYIRGLTK
NGDKIGTFEQVEGKVHLESNSLAVLSGTVSHERGIKAMDAVYKYLFSKYGLHLNAPSFATPNDDIGFVTRVYQGVKENGA
IFSHPNPWAWVAEAKLGRGDRAMELYDALNPYNQNDIIETRIAEPYSYVQFIMGRDHQDHGRANHPWLTGTSGWAYHATT
NYILGIKAGFDALEIDPCIPTSWPGFEVTREWRDATYQIKVENPQGVSKGVKSITLNGQAIEGAVPVQAAGSVNQVVVVL
G

Specific function: Involved in the production of beta-(1,2)-glucan. It is involved not only in invasion but also in bacteroid development [H]

COG id: COG3459

COG function: function code G; Cellobiose phosphorylase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens ChvB [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008928
- InterPro:   IPR009342
- InterPro:   IPR019282
- InterPro:   IPR021478
- InterPro:   IPR011013
- InterPro:   IPR010383
- InterPro:   IPR010403 [H]

Pfam domain/function: PF06204 CBM_X; PF10091 DUF2329; PF11329 DUF3131; PF06165 Glyco_transf_36; PF06205 GT36_AF [H]

EC number: NA

Molecular weight: Translated: 89972; Mature: 89972

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYGYFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYHSPEYNRVTKFRP
CCCCCCCCCCCEEEEECCCCCCCHHHHCCCHHHHHEEECCCCCEEEECCCCCCCEEEECC
NFTQDRPGHYVYLRDDATGDFWSISWQPVAKSLEQAKYEVRHGLSYSKFKCEYNGIHATK
CCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEE
TLFVPKGEDAEVWDVVIENTSNEVRTISAFNYVEFSFSHIKSDNQNHQMSLYSAGTAFKD
EEEECCCCCCCEEEEEEECCCCCEEEEEEECEEEEEHHHHCCCCCCCEEEEEECCCCCCC
GVIEYDLYYNTDDFLGFYYLTATFDADSYDGQRDQFLGMYRDEANPIAVAQGKCSNSAQT
CEEEEEEEECCCCCCEEEEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHH
CYNHCGALHKQFVLQPGEKVRFAVILGVGKGNGAKLREKYQDLSKVDSAFAGIKAHWDER
HHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
CAKFQVKSPNQGLDTMINAWTLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPH
HHEEEECCCCCCHHHHHHHHEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
TNPAMTRKRLVDLLRGQVKAGYGLHLFDPDWFDPEKADVKPSKSPTVVPTPSDEDKIHGI
CCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
KDTCSDDHLWIVPTILNYVKETGDFAFIDEVIPYADGGNATVYEHMMAALDFSAEYVGQT
CCCCCCCCEEEHHHHHHHHHHCCCEEEHHHHCCCCCCCCCHHHHHHHHHHCCCHHHCCCC
GICKGLRADWNDCLNLGGGESSMVSFLHFWALESFLELSRYRNDEAATDKYQAMADGVRE
HHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ACETHLWDEQGEWYIRGLTKNGDKIGTFEQVEGKVHLESNSLAVLSGTVSHERGIKAMDA
HHHHHCCCCCCCEEEEEECCCCCCCCCHHHCCCEEEECCCCEEEEEECCCHHCCCHHHHH
VYKYLFSKYGLHLNAPSFATPNDDIGFVTRVYQGVKENGAIFSHPNPWAWVAEAKLGRGD
HHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCC
RAMELYDALNPYNQNDIIETRIAEPYSYVQFIMGRDHQDHGRANHPWLTGTSGWAYHATT
HHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEC
NYILGIKAGFDALEIDPCIPTSWPGFEVTREWRDATYQIKVENPQGVSKGVKSITLNGQA
CEEEEEECCCCEEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCCCHHCCCEEEEECCEE
IEGAVPVQAAGSVNQVVVVLG
ECCCCCEECCCCCCEEEEEEC
>Mature Secondary Structure
MKYGYFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYHSPEYNRVTKFRP
CCCCCCCCCCCEEEEECCCCCCCHHHHCCCHHHHHEEECCCCCEEEECCCCCCCEEEECC
NFTQDRPGHYVYLRDDATGDFWSISWQPVAKSLEQAKYEVRHGLSYSKFKCEYNGIHATK
CCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEE
TLFVPKGEDAEVWDVVIENTSNEVRTISAFNYVEFSFSHIKSDNQNHQMSLYSAGTAFKD
EEEECCCCCCCEEEEEEECCCCCEEEEEEECEEEEEHHHHCCCCCCCEEEEEECCCCCCC
GVIEYDLYYNTDDFLGFYYLTATFDADSYDGQRDQFLGMYRDEANPIAVAQGKCSNSAQT
CEEEEEEEECCCCCCEEEEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHH
CYNHCGALHKQFVLQPGEKVRFAVILGVGKGNGAKLREKYQDLSKVDSAFAGIKAHWDER
HHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
CAKFQVKSPNQGLDTMINAWTLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPH
HHEEEECCCCCCHHHHHHHHEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
TNPAMTRKRLVDLLRGQVKAGYGLHLFDPDWFDPEKADVKPSKSPTVVPTPSDEDKIHGI
CCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
KDTCSDDHLWIVPTILNYVKETGDFAFIDEVIPYADGGNATVYEHMMAALDFSAEYVGQT
CCCCCCCCEEEHHHHHHHHHHCCCEEEHHHHCCCCCCCCCHHHHHHHHHHCCCHHHCCCC
GICKGLRADWNDCLNLGGGESSMVSFLHFWALESFLELSRYRNDEAATDKYQAMADGVRE
HHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ACETHLWDEQGEWYIRGLTKNGDKIGTFEQVEGKVHLESNSLAVLSGTVSHERGIKAMDA
HHHHHCCCCCCCEEEEEECCCCCCCCCHHHCCCEEEECCCCEEEEEECCCHHCCCHHHHH
VYKYLFSKYGLHLNAPSFATPNDDIGFVTRVYQGVKENGAIFSHPNPWAWVAEAKLGRGD
HHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCC
RAMELYDALNPYNQNDIIETRIAEPYSYVQFIMGRDHQDHGRANHPWLTGTSGWAYHATT
HHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEC
NYILGIKAGFDALEIDPCIPTSWPGFEVTREWRDATYQIKVENPQGVSKGVKSITLNGQA
CEEEEEECCCCEEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCCCHHCCCEEEEECCEE
IEGAVPVQAAGSVNQVVVVLG
ECCCCCEECCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2154461; 11481430 [H]