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The map label for this gene is ypjD [H]

Identifier: 227080742

GI number: 227080742

Start: 551105

End: 551908

Strand: Reverse

Name: ypjD [H]

Synonym: VCM66_0517

Alternate gene names: 227080742

Gene position: 551908-551105 (Counterclockwise)

Preceding gene: 227080748

Following gene: 227080741

Centisome position: 19.08

GC content: 46.02

Gene sequence:

>804_bases
GTGGCAGGTGTGGACAACTTAATCGCGATTGCCGCGGCGATGTTATATCTCTTGTCGATTGCGACCATCGTACCCGGGCT
GGTCAATCAAACCGGGATCCGAGCAAAAACCGTGTTTATCAGTGCAGCGATTGCACTGCTGTTTCATGGCTGGTTACTGA
GTGATTTGATCCTACACAGCAGTGGGCAAAACCTGAGTATCCTTAATGTGGCTTCTTTGATTAGCTTCATCATCTCTTTA
GCGATGAGCTTAGCCATGTTCAAAACTCGCCTCTGGTTTTTGCTGCCTGTTGCCTACAGTTTTTCTGCCATTAACCTTTC
TGCAGCCACATTCTTACCGGGAACTTTTATTACCCATTTGGAAAGTGATCCCAAACTGCTGCTGCACATCTCTTTAGCGC
TATTCTCTTACTCAACGTTGAGCATCGGAGCCTTGTATGCACTGCAGCTTGCTTGGCTCGACCATAAGCTGAAAAGTAAA
AAAGTCTTCTCTATCAATCCTAATTTACCGCCTCTGCTGCTGGTTGAGCGTCAGTTATTTAAGATCATTTTGATTGGTAA
CTTGCTGCTCACAGGTACCTTGTTGACTGGTTTTATCTTTGTGCAAGATATGTTTGCCCAAGGCAAAGCCCATAAAGGCA
TCCTCTCGTTTGTCGCATGGATTGTGTATTCTATTTTGCTTTGGGGTCATTACCGTAAAGGCTGGCGCGGTAAAAAAGTG
ACTTGGTTTGCGGTCGCAGGCGCTACGTTACTCACCTTGGCTTACTTCGGTAGCCGTTTTGTACGTGAAATCATTCTGCG
CTGA

Upstream 100 bases:

>100_bases
GAGCCATATTTTGTGCTCTAACCTCTCAAAAACGAAGGTGATACAAAGTAGCCCATTAGCACAGAGCAAGGTATAATTCG
CCCACTTAACCCTTATCTAT

Downstream 100 bases:

>100_bases
ACAAGATTCATCGAGCTGTCATTTGACACTCGCAATACATTCAGCCTTTAATTAGAACTCTGTCATAAGGAAAATTCGCG
TTTTGGACGACATATCAACG

Product: putative Inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MAGVDNLIAIAAAMLYLLSIATIVPGLVNQTGIRAKTVFISAAIALLFHGWLLSDLILHSSGQNLSILNVASLISFIISL
AMSLAMFKTRLWFLLPVAYSFSAINLSAATFLPGTFITHLESDPKLLLHISLALFSYSTLSIGALYALQLAWLDHKLKSK
KVFSINPNLPPLLLVERQLFKIILIGNLLLTGTLLTGFIFVQDMFAQGKAHKGILSFVAWIVYSILLWGHYRKGWRGKKV
TWFAVAGATLLTLAYFGSRFVREIILR

Sequences:

>Translated_267_residues
MAGVDNLIAIAAAMLYLLSIATIVPGLVNQTGIRAKTVFISAAIALLFHGWLLSDLILHSSGQNLSILNVASLISFIISL
AMSLAMFKTRLWFLLPVAYSFSAINLSAATFLPGTFITHLESDPKLLLHISLALFSYSTLSIGALYALQLAWLDHKLKSK
KVFSINPNLPPLLLVERQLFKIILIGNLLLTGTLLTGFIFVQDMFAQGKAHKGILSFVAWIVYSILLWGHYRKGWRGKKV
TWFAVAGATLLTLAYFGSRFVREIILR
>Mature_266_residues
AGVDNLIAIAAAMLYLLSIATIVPGLVNQTGIRAKTVFISAAIALLFHGWLLSDLILHSSGQNLSILNVASLISFIISLA
MSLAMFKTRLWFLLPVAYSFSAINLSAATFLPGTFITHLESDPKLLLHISLALFSYSTLSIGALYALQLAWLDHKLKSKK
VFSINPNLPPLLLVERQLFKIILIGNLLLTGTLLTGFIFVQDMFAQGKAHKGILSFVAWIVYSILLWGHYRKGWRGKKVT
WFAVAGATLLTLAYFGSRFVREIILR

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=259, Percent_Identity=51.7374517374517, Blast_Score=251, Evalue=4e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 29449; Mature: 29318

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGVDNLIAIAAAMLYLLSIATIVPGLVNQTGIRAKTVFISAAIALLFHGWLLSDLILHS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
SGQNLSILNVASLISFIISLAMSLAMFKTRLWFLLPVAYSFSAINLSAATFLPGTFITHL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHCCHHHHHHC
ESDPKLLLHISLALFSYSTLSIGALYALQLAWLDHKLKSKKVFSINPNLPPLLLVERQLF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
KIILIGNLLLTGTLLTGFIFVQDMFAQGKAHKGILSFVAWIVYSILLWGHYRKGWRGKKV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
TWFAVAGATLLTLAYFGSRFVREIILR
EEEEHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AGVDNLIAIAAAMLYLLSIATIVPGLVNQTGIRAKTVFISAAIALLFHGWLLSDLILHS
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
SGQNLSILNVASLISFIISLAMSLAMFKTRLWFLLPVAYSFSAINLSAATFLPGTFITHL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHCCHHHHHHC
ESDPKLLLHISLALFSYSTLSIGALYALQLAWLDHKLKSKKVFSINPNLPPLLLVERQLF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
KIILIGNLLLTGTLLTGFIFVQDMFAQGKAHKGILSFVAWIVYSILLWGHYRKGWRGKKV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
TWFAVAGATLLTLAYFGSRFVREIILR
EEEEHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]