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The map label for this gene is psd

Identifier: 227080551

GI number: 227080551

Start: 343747

End: 344604

Strand: Reverse

Name: psd

Synonym: VCM66_0323

Alternate gene names: 227080551

Gene position: 344604-343747 (Counterclockwise)

Preceding gene: 227080552

Following gene: 227080550

Centisome position: 11.91

GC content: 52.45

Gene sequence:

>858_bases
ATGGATAAGATTAAAGTTGGACTGCAATATTGGATTCCACAACATGCCCTGACCCGCTTGGTTGGCAAGTTGGCGTCTGC
GCGTGCAGGCAGCCTGACCACGGCCATCATCCGCTGGTTCATCAAGCAATATAACGTCAACATGGACGAGGCTCTGCACT
CTGATCCGACTCACTTCAAGACGTTTAATGAATTTTTTGTGCGTGAGCTAAAAGCTGGCGTGCGCCCTATCGCTGAAGGC
GAAAAGGTGATCACCCATCCTGCCGATGCGTGCGTGAGTCAGTTTGGTGCGATTGAATACGGTAAACTTATCCAAGCCAA
AGGCCACACTTACTCAGCCCAAGAGCTGCTCGGTGGTGATGCCAAGCTCGCGGAAGAATTCCGTGATGGTGATTTTGCGA
CTCTGTATCTCTCGCCACGTGATTATCACCGCGTACATATGCCTTGTGATGGCACTTTGCGCCAAATGATCTACGTACCG
GGCGATCTGTTCTCGGTAAACCCTCTGACAGCGGAAAATGTACCGAACTTGTTTGCCCGCAACGAGCGTGTGGTGTGTAT
TTTCGATACAGAATTTGGCCCAATGGCACAAGTGCTGGTTGGCGCCACCATTGTCGGCAGTATTGAACTGGTTTGGGCGG
GCACCGTGACTCCGCCGCGTGGCAACACCGTTTATCGTTGGGACTACCCAGCCAACGGTAACCAAGCAGTGGTTCTCAAA
AAAGGCGAAGAGATGGGTCGCTTTAAACTGGGCTCCACCGTGATCAACCTGTTTGCCAAACAAGCTATTCGCTTTGATGA
CAGCATGGCACTGGGCGCACCAACCCGCATGGGCGAGCCCTACGCACACCAAGCTTAA

Upstream 100 bases:

>100_bases
TGTAAGAGCAAATTGTTAGCAAGTTTAGAGCATCTACTGACAGAAGGCGCGATTTTCAGTAACATCTCGCGCCCATCACC
ACTCTATTGGAATGTAAACC

Downstream 100 bases:

>100_bases
TATACGACTTAGAGTTGCAGCCAACACCAACGCTGCTTCAAGTCGGAAGACTCAACATCCCAGCTTCGGCTGGGATGTTG
TCTTTTGAAGCTCGCCACAC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MDKIKVGLQYWIPQHALTRLVGKLASARAGSLTTAIIRWFIKQYNVNMDEALHSDPTHFKTFNEFFVRELKAGVRPIAEG
EKVITHPADACVSQFGAIEYGKLIQAKGHTYSAQELLGGDAKLAEEFRDGDFATLYLSPRDYHRVHMPCDGTLRQMIYVP
GDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQVLVGATIVGSIELVWAGTVTPPRGNTVYRWDYPANGNQAVVLK
KGEEMGRFKLGSTVINLFAKQAIRFDDSMALGAPTRMGEPYAHQA

Sequences:

>Translated_285_residues
MDKIKVGLQYWIPQHALTRLVGKLASARAGSLTTAIIRWFIKQYNVNMDEALHSDPTHFKTFNEFFVRELKAGVRPIAEG
EKVITHPADACVSQFGAIEYGKLIQAKGHTYSAQELLGGDAKLAEEFRDGDFATLYLSPRDYHRVHMPCDGTLRQMIYVP
GDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQVLVGATIVGSIELVWAGTVTPPRGNTVYRWDYPANGNQAVVLK
KGEEMGRFKLGSTVINLFAKQAIRFDDSMALGAPTRMGEPYAHQA
>Mature_285_residues
MDKIKVGLQYWIPQHALTRLVGKLASARAGSLTTAIIRWFIKQYNVNMDEALHSDPTHFKTFNEFFVRELKAGVRPIAEG
EKVITHPADACVSQFGAIEYGKLIQAKGHTYSAQELLGGDAKLAEEFRDGDFATLYLSPRDYHRVHMPCDGTLRQMIYVP
GDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQVLVGATIVGSIELVWAGTVTPPRGNTVYRWDYPANGNQAVVLK
KGEEMGRFKLGSTVINLFAKQAIRFDDSMALGAPTRMGEPYAHQA

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=300, Percent_Identity=32.3333333333333, Blast_Score=131, Evalue=7e-31,
Organism=Escherichia coli, GI1790604, Length=283, Percent_Identity=59.7173144876325, Blast_Score=348, Evalue=2e-97,
Organism=Caenorhabditis elegans, GI71980843, Length=282, Percent_Identity=32.2695035460993, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI71980840, Length=282, Percent_Identity=32.2695035460993, Blast_Score=122, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6321609, Length=275, Percent_Identity=30.1818181818182, Blast_Score=123, Evalue=4e-29,
Organism=Saccharomyces cerevisiae, GI6324160, Length=159, Percent_Identity=40.251572327044, Blast_Score=94, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24649526, Length=303, Percent_Identity=30.3630363036304, Blast_Score=121, Evalue=5e-28,
Organism=Drosophila melanogaster, GI24649528, Length=303, Percent_Identity=30.3630363036304, Blast_Score=121, Evalue=5e-28,
Organism=Drosophila melanogaster, GI24649524, Length=303, Percent_Identity=30.3630363036304, Blast_Score=121, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_VIBC3 (A5F3N7)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- STRING:   A5F3N7
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A2741
- eggNOG:   COG0688
- HOGENOM:   HBG302256
- OMA:   MATVWHG
- ProtClustDB:   PRK00044
- BioCyc:   VCHO345073:VC0395_A2741-MONOMER
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 31652; Mature: 31652

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIKVGLQYWIPQHALTRLVGKLASARAGSLTTAIIRWFIKQYNVNMDEALHSDPTHFK
CCCEEECHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCHHH
TFNEFFVRELKAGVRPIAEGEKVITHPADACVSQFGAIEYGKLIQAKGHTYSAQELLGGD
HHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHCCCCHHHEEEECCCCCCHHHHHCCC
AKLAEEFRDGDFATLYLSPRDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAENVPNLFAR
HHHHHHHCCCCEEEEEECCCCCCEEECCCCHHHHHEEECCCCEEECCCCCCCCCCHHHHC
NERVVCIFDTEFGPMAQVLVGATIVGSIELVWAGTVTPPRGNTVYRWDYPANGNQAVVLK
CCEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECCCCCCCEEEEEE
KGEEMGRFKLGSTVINLFAKQAIRFDDSMALGAPTRMGEPYAHQA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDKIKVGLQYWIPQHALTRLVGKLASARAGSLTTAIIRWFIKQYNVNMDEALHSDPTHFK
CCCEEECHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCHHH
TFNEFFVRELKAGVRPIAEGEKVITHPADACVSQFGAIEYGKLIQAKGHTYSAQELLGGD
HHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHCCCCHHHEEEECCCCCCHHHHHCCC
AKLAEEFRDGDFATLYLSPRDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAENVPNLFAR
HHHHHHHCCCCEEEEEECCCCCCEEECCCCHHHHHEEECCCCEEECCCCCCCCCCHHHHC
NERVVCIFDTEFGPMAQVLVGATIVGSIELVWAGTVTPPRGNTVYRWDYPANGNQAVVLK
CCEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECCCCCCCEEEEEE
KGEEMGRFKLGSTVINLFAKQAIRFDDSMALGAPTRMGEPYAHQA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA