Click here to switch to the map view.

The map label for this gene is yibP [H]

Identifier: 227080547

GI number: 227080547

Start: 338093

End: 339241

Strand: Reverse

Name: yibP [H]

Synonym: VCM66_0319

Alternate gene names: 227080547

Gene position: 339241-338093 (Counterclockwise)

Preceding gene: 227080548

Following gene: 227080542

Centisome position: 11.73

GC content: 48.56

Gene sequence:

>1149_bases
ATGACAGCAACGGATCCGCACGCGATTTTCAGTGACTTTCTAGGAAAAACCTTGACCCGACGTCTGCTGGTCTGCCTGTT
ATTTATGGTTTCGCCGTCGCTCTTTGCGGCTACGCAACAGGAGTTAACGGGGGTAAAAAGTGAAATATCTCGCCAACAAC
AATCACTGGCCGAACAACAAAAATCGCTCGACCAACTACAACAAGCCCTTAAACAACAAGAGCTTGGCATCAACAGTATC
GAAAATCAGATCACGAAAACCAAAAACGATCTGGAGAATGCCAATCGCAACATTGCTCAGCTCAATAGTAATATTCAGGC
GCTGGAAACTCAGAAACAGCAACAAGCCGATAAACTCGAACGCCTACTGCAGACCTACTATCTCACTAAACGCTCACTGA
CGAATGGTCAATTTTTTCATCGCAGTGCCGATGAAGACCGCATCAGCCAGTACTATCAACATTTGGCAAAAAGCCGCGCG
CAAGCTATCGAAGCTTTAGAAAAAACCCAAGCCGATCTCAATGCCAGTCAACAGCAGAGACAAGCTGAGCGTGAACAGAT
TGAGAAATTACTGGCAGAGCAGACCCAACAGCGAGACAAACTGGCTAAAACGCAAAGTGAGCGTAAGCAAACCGTAAAGA
AAATTGAGAGCAGCATTTCCGGCGACAAAGTCTACCTTGCCGAATTGCAGCGCAACGAAACGCGCCTCAAAGCTGAAATA
GCCAAAGCCGCCAAACGCAATGCAGTATTGATGAATGGCATTGCGAGCCAACGCGGTAAGCTACCGTGGCCACTGAAAGG
GCGTGTGCTACATAACTTCGGTGAACGCCAAACTGGGCAGATTGATTGGAAAGGTTTGGTCATTGATGCCAATTACGGCC
AAGAGGTCAAAGCGGTTTATCCGGGCACGATCGTGTTTGCCGAGTATCTGCGAGGTTATGGCTTGGTTGTGCTCCTCGAC
CACGGCAAAGGTGATATGACACTGTATGGCTTCAACCAAACTCTGCTCAAGAAAGAGGGCGACAAAGTTATCGCAGGTGA
AACCATTGCTCTTGCGGGTGATACTGGTGGTCAATCACGCCCTGCCCTCTACTTTGAAATCCGTCGTAATAGCCGCGCGG
AAAACCCTTCGCAGTGGTTACAGCGCTAA

Upstream 100 bases:

>100_bases
ATGAGAATTGCAAACTTTTGACATCACAGGCTCGCCTGATGCCAAGCTTTGGGTATACTGAAGCACCCGTTTTTTATTCA
CTAACACTAGACCAAACTCA

Downstream 100 bases:

>100_bases
GAGGCGTAAAACGCCTCAACAACCGCAATCACGTTATCGAGCAGCGCATAGGGGAGTTGATTGATTCCCCCGGCCGATTC
TCGCCCCCCACCAGAAGGAA

Product: NlpD-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MTATDPHAIFSDFLGKTLTRRLLVCLLFMVSPSLFAATQQELTGVKSEISRQQQSLAEQQKSLDQLQQALKQQELGINSI
ENQITKTKNDLENANRNIAQLNSNIQALETQKQQQADKLERLLQTYYLTKRSLTNGQFFHRSADEDRISQYYQHLAKSRA
QAIEALEKTQADLNASQQQRQAEREQIEKLLAEQTQQRDKLAKTQSERKQTVKKIESSISGDKVYLAELQRNETRLKAEI
AKAAKRNAVLMNGIASQRGKLPWPLKGRVLHNFGERQTGQIDWKGLVIDANYGQEVKAVYPGTIVFAEYLRGYGLVVLLD
HGKGDMTLYGFNQTLLKKEGDKVIAGETIALAGDTGGQSRPALYFEIRRNSRAENPSQWLQR

Sequences:

>Translated_382_residues
MTATDPHAIFSDFLGKTLTRRLLVCLLFMVSPSLFAATQQELTGVKSEISRQQQSLAEQQKSLDQLQQALKQQELGINSI
ENQITKTKNDLENANRNIAQLNSNIQALETQKQQQADKLERLLQTYYLTKRSLTNGQFFHRSADEDRISQYYQHLAKSRA
QAIEALEKTQADLNASQQQRQAEREQIEKLLAEQTQQRDKLAKTQSERKQTVKKIESSISGDKVYLAELQRNETRLKAEI
AKAAKRNAVLMNGIASQRGKLPWPLKGRVLHNFGERQTGQIDWKGLVIDANYGQEVKAVYPGTIVFAEYLRGYGLVVLLD
HGKGDMTLYGFNQTLLKKEGDKVIAGETIALAGDTGGQSRPALYFEIRRNSRAENPSQWLQR
>Mature_381_residues
TATDPHAIFSDFLGKTLTRRLLVCLLFMVSPSLFAATQQELTGVKSEISRQQQSLAEQQKSLDQLQQALKQQELGINSIE
NQITKTKNDLENANRNIAQLNSNIQALETQKQQQADKLERLLQTYYLTKRSLTNGQFFHRSADEDRISQYYQHLAKSRAQ
AIEALEKTQADLNASQQQRQAEREQIEKLLAEQTQQRDKLAKTQSERKQTVKKIESSISGDKVYLAELQRNETRLKAEIA
KAAKRNAVLMNGIASQRGKLPWPLKGRVLHNFGERQTGQIDWKGLVIDANYGQEVKAVYPGTIVFAEYLRGYGLVVLLDH
GKGDMTLYGFNQTLLKKEGDKVIAGETIALAGDTGGQSRPALYFEIRRNSRAENPSQWLQR

Specific function: Unknown

COG id: COG4942

COG function: function code D; Membrane-bound metallopeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0756 [H]

Homologues:

Organism=Escherichia coli, GI87082297, Length=416, Percent_Identity=33.1730769230769, Blast_Score=214, Evalue=1e-56,
Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=36.9747899159664, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87082174, Length=120, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 43263; Mature: 43131

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATDPHAIFSDFLGKTLTRRLLVCLLFMVSPSLFAATQQELTGVKSEISRQQQSLAEQQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSLDQLQQALKQQELGINSIENQITKTKNDLENANRNIAQLNSNIQALETQKQQQADKLE
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHH
RLLQTYYLTKRSLTNGQFFHRSADEDRISQYYQHLAKSRAQAIEALEKTQADLNASQQQR
HHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
QAEREQIEKLLAEQTQQRDKLAKTQSERKQTVKKIESSISGDKVYLAELQRNETRLKAEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH
AKAAKRNAVLMNGIASQRGKLPWPLKGRVLHNFGERQTGQIDWKGLVIDANYGQEVKAVY
HHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHC
PGTIVFAEYLRGYGLVVLLDHGKGDMTLYGFNQTLLKKEGDKVIAGETIALAGDTGGQSR
CHHHHHHHHHHCCCEEEEEECCCCCEEEEECCHHHHHCCCCEEEECCEEEEECCCCCCCC
PALYFEIRRNSRAENPSQWLQR
CEEEEEEECCCCCCCHHHHHCC
>Mature Secondary Structure 
TATDPHAIFSDFLGKTLTRRLLVCLLFMVSPSLFAATQQELTGVKSEISRQQQSLAEQQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSLDQLQQALKQQELGINSIENQITKTKNDLENANRNIAQLNSNIQALETQKQQQADKLE
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHH
RLLQTYYLTKRSLTNGQFFHRSADEDRISQYYQHLAKSRAQAIEALEKTQADLNASQQQR
HHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
QAEREQIEKLLAEQTQQRDKLAKTQSERKQTVKKIESSISGDKVYLAELQRNETRLKAEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH
AKAAKRNAVLMNGIASQRGKLPWPLKGRVLHNFGERQTGQIDWKGLVIDANYGQEVKAVY
HHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHC
PGTIVFAEYLRGYGLVVLLDHGKGDMTLYGFNQTLLKKEGDKVIAGETIALAGDTGGQSR
CHHHHHHHHHHCCCEEEEEECCCCCEEEEECCHHHHHCCCCEEEECCEEEEECCCCCCCC
PALYFEIRRNSRAENPSQWLQR
CEEEEEEECCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]