Click here to switch to the map view.

The map label for this gene is yibO

Identifier: 227080548

GI number: 227080548

Start: 339410

End: 340942

Strand: Reverse

Name: yibO

Synonym: VCM66_0320

Alternate gene names: 227080548

Gene position: 340942-339410 (Counterclockwise)

Preceding gene: 227080549

Following gene: 227080547

Centisome position: 11.79

GC content: 51.08

Gene sequence:

>1533_bases
ATGTCAGCTAAGAAGCCAATGGCTCTGGTGATCCTAGATGGTTGGGGTTACCGCGAAGACAACGCAAATAACGCGATCAA
TAATGCGCGTACACCTGTGATGGATAGCCTAATGGCCAACAACCCTCACACTCTGATTTCTGCTTCTGGTATGGACGTAG
GTCTACCTGATGGTCAAATGGGTAACTCAGAAGTGGGTCATACCAACATCGGTGCTGGCCGTATTGTTTACCAAGACCTA
ACTCGCATCACCAAAGCGATCATGGATGGTGAATTCCAACACAACAAAGTTCTGGTGGCAGCCATTGATAAAGCAGTTGC
TGCGGGCAAAGCGGTTCACCTGATGGGTCTGATGTCTCCAGGTGGCGTACACTCACACGAAGACCACATCTACGCAGCAG
TAGAAATGGCGGCCGCACGTGGCGCAGAAAAAATCTACCTGCACTGCTTCCTTGACGGTCGTGACACACCACCACGTAGC
GCAGAAGCGTCACTGAAACGCTTCCAAGATCTGTTTGCCAAACTGGGTAAAGGCCGTATCGCTTCTATCGTGGGTCGTTA
CTACGCCATGGATCGTGACAACAACTGGGATCGCGTTGAAAAAGCCTATGACCTGCTGACTCTGGCGCAAGGTGAGTTTA
CTTATGACTCAGCGGTTGAAGCACTGCAAGCGGCTTACGCTCGTGAAGAAAACGATGAGTTTGTGAAAGCAACCGAAATC
CGCGCAGCGGGTCAAGAATCTGCCGCGATGCAAGATGGCGATGCCCTGCTGTTCATGAACTACCGTGCTGACCGCGCGCG
TCAAATCACCCGTACTTTCGTGCCTGATTTCGCAGGCTTTAGCCGCAAAGCCTTCCCAGCGCTGGATTTTGTGATGCTGA
CTCAATACGCAGCAGATATCCCACTCCAGTGTGCGTTTGGTCCAGCGTCACTGGAAAACACTTACGGTGAGTGGCTATCA
AAAGCGGGTAAAACTCAGCTACGTATTTCTGAAACCGAGAAATACGCGCACGTAACCTTCTTCTTCAACGGCGGCGTTGA
AAATGAATTCCCAGGCGAAGAGCGTCAACTGGTGGCTTCACCAAAAGTAGCCACCTACGACCTACAACCAGAAATGAGCT
CTAAAGAGCTGACTGACAAGCTAGTTGCAGCGATCAAATCAGGCAAATACGATGCGATCATCTGTAACTATCCAAACGGC
GACATGGTCGGTCACACTGGCGTTTACGAAGCTGCAGTGAAAGCGTGTGAAGCCGTAGACGAGTGTATTGGTCGTGTGGT
TGAAGCCATCAAAGAAGTGGATGGTCAACTGCTGATCACCGCTGACCACGGCAACGCGGAAATGATGATTGACCCAGAAA
CGGGCGGCGTACACACAGCGCACACTAGCCTACCTGTACCACTTATCTATGTCGGCAACAAAGCGATCAGCCTAAAAGAA
GGCGGAAAGCTATCGGATCTAGCTCCAACCATGTTGGCGCTGTCGGATCTGGATATTCCAGCAGACATGTCAGGCCAAGT
GCTGTACAGCTAA

Upstream 100 bases:

>100_bases
AGAGAATCATTGATCTTAACCGGATGCAAAACGTCTAGATTGTAGTAAAATTACGCTAATTTTACGTTTCAGTTATTTTG
ATTTTGACGAGGTTAGAACT

Downstream 100 bases:

>100_bases
GCTGACTCGATGATGATGAAAGCCCTGAATACTCAGGGCTTTTTTATACGCATTTCCCACCGAGTGCGATGAGAATTGCA
AACTTTTGACATCACAGGCT

Product: phosphoglyceromutase

Products: NA

Alternate protein names: BPG-independent PGAM; Phosphoglyceromutase; iPGM

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHTLISASGMDVGLPDGQMGNSEVGHTNIGAGRIVYQDL
TRITKAIMDGEFQHNKVLVAAIDKAVAAGKAVHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRS
AEASLKRFQDLFAKLGKGRIASIVGRYYAMDRDNNWDRVEKAYDLLTLAQGEFTYDSAVEALQAAYAREENDEFVKATEI
RAAGQESAAMQDGDALLFMNYRADRARQITRTFVPDFAGFSRKAFPALDFVMLTQYAADIPLQCAFGPASLENTYGEWLS
KAGKTQLRISETEKYAHVTFFFNGGVENEFPGEERQLVASPKVATYDLQPEMSSKELTDKLVAAIKSGKYDAIICNYPNG
DMVGHTGVYEAAVKACEAVDECIGRVVEAIKEVDGQLLITADHGNAEMMIDPETGGVHTAHTSLPVPLIYVGNKAISLKE
GGKLSDLAPTMLALSDLDIPADMSGQVLYS

Sequences:

>Translated_510_residues
MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHTLISASGMDVGLPDGQMGNSEVGHTNIGAGRIVYQDL
TRITKAIMDGEFQHNKVLVAAIDKAVAAGKAVHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRS
AEASLKRFQDLFAKLGKGRIASIVGRYYAMDRDNNWDRVEKAYDLLTLAQGEFTYDSAVEALQAAYAREENDEFVKATEI
RAAGQESAAMQDGDALLFMNYRADRARQITRTFVPDFAGFSRKAFPALDFVMLTQYAADIPLQCAFGPASLENTYGEWLS
KAGKTQLRISETEKYAHVTFFFNGGVENEFPGEERQLVASPKVATYDLQPEMSSKELTDKLVAAIKSGKYDAIICNYPNG
DMVGHTGVYEAAVKACEAVDECIGRVVEAIKEVDGQLLITADHGNAEMMIDPETGGVHTAHTSLPVPLIYVGNKAISLKE
GGKLSDLAPTMLALSDLDIPADMSGQVLYS
>Mature_509_residues
SAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHTLISASGMDVGLPDGQMGNSEVGHTNIGAGRIVYQDLT
RITKAIMDGEFQHNKVLVAAIDKAVAAGKAVHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRSA
EASLKRFQDLFAKLGKGRIASIVGRYYAMDRDNNWDRVEKAYDLLTLAQGEFTYDSAVEALQAAYAREENDEFVKATEIR
AAGQESAAMQDGDALLFMNYRADRARQITRTFVPDFAGFSRKAFPALDFVMLTQYAADIPLQCAFGPASLENTYGEWLSK
AGKTQLRISETEKYAHVTFFFNGGVENEFPGEERQLVASPKVATYDLQPEMSSKELTDKLVAAIKSGKYDAIICNYPNGD
MVGHTGVYEAAVKACEAVDECIGRVVEAIKEVDGQLLITADHGNAEMMIDPETGGVHTAHTSLPVPLIYVGNKAISLKEG
GKLSDLAPTMLALSDLDIPADMSGQVLYS

Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate

COG id: COG0696

COG function: function code G; Phosphoglyceromutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BPG-independent phosphoglycerate mutase family

Homologues:

Organism=Escherichia coli, GI1790041, Length=510, Percent_Identity=73.1372549019608, Blast_Score=774, Evalue=0.0,
Organism=Caenorhabditis elegans, GI32564249, Length=513, Percent_Identity=48.1481481481481, Blast_Score=453, Evalue=1e-127,
Organism=Caenorhabditis elegans, GI17507741, Length=513, Percent_Identity=48.1481481481481, Blast_Score=453, Evalue=1e-127,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GPMI_VIBC3 (A5F3N4)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F3N4
- SMR:   A5F3N4
- STRING:   A5F3N4
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A2738
- eggNOG:   COG0696
- HOGENOM:   HBG613255
- OMA:   DNKTDEF
- ProtClustDB:   PRK05434
- BioCyc:   VCHO345073:VC0395_A2738-MONOMER
- GO:   GO:0005737
- GO:   GO:0006096
- HAMAP:   MF_01038
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR011258
- InterPro:   IPR006124
- InterPro:   IPR005995
- Gene3D:   G3DSA:3.40.720.10
- Gene3D:   G3DSA:3.40.1450.10
- PIRSF:   PIRSF001492
- TIGRFAMs:   TIGR01307

Pfam domain/function: PF06415 iPGM_N; PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core; SSF64158 BPG-indep_PGM_N

EC number: =5.4.2.1

Molecular weight: Translated: 55365; Mature: 55234

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: ACT_SITE 63-63

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHTLISASGMDVGLPDGQM
CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCC
GNSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNKVLVAAIDKAVAAGKAVHLMGLMSP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCCEEEEEEECCC
GGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRSAEASLKRFQDLFAKLGKGRI
CCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHH
ASIVGRYYAMDRDNNWDRVEKAYDLLTLAQGEFTYDSAVEALQAAYAREENDEFVKATEI
HHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEHHHH
RAAGQESAAMQDGDALLFMNYRADRARQITRTFVPDFAGFSRKAFPALDFVMLTQYAADI
HHCCCHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
PLQCAFGPASLENTYGEWLSKAGKTQLRISETEKYAHVTFFFNGGVENEFPGEERQLVAS
CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCHHEEEEC
PKVATYDLQPEMSSKELTDKLVAAIKSGKYDAIICNYPNGDMVGHTGVYEAAVKACEAVD
CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
ECIGRVVEAIKEVDGQLLITADHGNAEMMIDPETGGVHTAHTSLPVPLIYVGNKAISLKE
HHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCEEEECCCCCEEEEEECCEEEEECC
GGKLSDLAPTMLALSDLDIPADMSGQVLYS
CCCCHHHHHHHHHHHCCCCCCCCCCCEECC
>Mature Secondary Structure 
SAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHTLISASGMDVGLPDGQM
CCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCC
GNSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNKVLVAAIDKAVAAGKAVHLMGLMSP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCCEEEEEEECCC
GGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRSAEASLKRFQDLFAKLGKGRI
CCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHH
ASIVGRYYAMDRDNNWDRVEKAYDLLTLAQGEFTYDSAVEALQAAYAREENDEFVKATEI
HHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEHHHH
RAAGQESAAMQDGDALLFMNYRADRARQITRTFVPDFAGFSRKAFPALDFVMLTQYAADI
HHCCCHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
PLQCAFGPASLENTYGEWLSKAGKTQLRISETEKYAHVTFFFNGGVENEFPGEERQLVAS
CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCHHEEEEC
PKVATYDLQPEMSSKELTDKLVAAIKSGKYDAIICNYPNGDMVGHTGVYEAAVKACEAVD
CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
ECIGRVVEAIKEVDGQLLITADHGNAEMMIDPETGGVHTAHTSLPVPLIYVGNKAISLKE
HHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCEEEECCCCCEEEEEECCEEEEECC
GGKLSDLAPTMLALSDLDIPADMSGQVLYS
CCCCHHHHHHHHHHHCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA