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The map label for this gene is rsd [H]

Identifier: 227080542

GI number: 227080542

Start: 333546

End: 334040

Strand: Reverse

Name: rsd [H]

Synonym: VCM66_0314

Alternate gene names: 227080542

Gene position: 334040-333546 (Counterclockwise)

Preceding gene: 227080547

Following gene: 227080532

Centisome position: 11.55

GC content: 44.85

Gene sequence:

>495_bases
ATGGTCATGCTAAGAAAATTCAAAAACGTCCAAGAACAATGGGGTGGTTCGAGCGATATCATTGACCATTGGCTGGATAA
ACGACAGCATGTGATCGTTGAATATTGTAAGCTGGCGGCACTGCAACCTTGTACAACCAAAGCTGCGGTTTCTGAACTCC
CTTCTCCACAGGCTCTGCTGTATTTTTGCCAAGAATTAGTGGATTACATCTCTGAAGGCCATTTCAAAATCTATGACATG
GTCATGGATAAGTGGCACGCCACCGGTTTTAAAGCGACCGATGAGATCAATCAAGTCTACGGTAAAATCGTCGCTACCAC
CGAACCCCTGCTCAATTTTAATGATCAGTACGCAACGGTGACTGAATACGATGAACTGCTCGATCTAGATCGTGACTTAT
CAAAAGTTGGCGAAGTGCTTGAGCTACGCTTTTCTCTTGAAGATCAATTGATCCAGTTAATTGCGGATAGCCTTGCTGTA
CCTCCGGGTGCTTAG

Upstream 100 bases:

>100_bases
ATTATTGACTATAACTTTTTGTGAGGGCAGTAGTGATATCTTATTGATATTACTAAAAAGGCAAAGGAACGATCGTCAGT
GACGATCCGATCATGAGGAC

Downstream 100 bases:

>100_bases
CAGAACACTCGTTTTCAATCGGTGATTTCCGCTGCGAAGATGAATGTAAAAAATAGACCAATAAAAAAGGCACCTTAAGG
TGCCTTTTTTCATAGCTTGA

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MVMLRKFKNVQEQWGGSSDIIDHWLDKRQHVIVEYCKLAALQPCTTKAAVSELPSPQALLYFCQELVDYISEGHFKIYDM
VMDKWHATGFKATDEINQVYGKIVATTEPLLNFNDQYATVTEYDELLDLDRDLSKVGEVLELRFSLEDQLIQLIADSLAV
PPGA

Sequences:

>Translated_164_residues
MVMLRKFKNVQEQWGGSSDIIDHWLDKRQHVIVEYCKLAALQPCTTKAAVSELPSPQALLYFCQELVDYISEGHFKIYDM
VMDKWHATGFKATDEINQVYGKIVATTEPLLNFNDQYATVTEYDELLDLDRDLSKVGEVLELRFSLEDQLIQLIADSLAV
PPGA
>Mature_164_residues
MVMLRKFKNVQEQWGGSSDIIDHWLDKRQHVIVEYCKLAALQPCTTKAAVSELPSPQALLYFCQELVDYISEGHFKIYDM
VMDKWHATGFKATDEINQVYGKIVATTEPLLNFNDQYATVTEYDELLDLDRDLSKVGEVLELRFSLEDQLIQLIADSLAV
PPGA

Specific function: Has binding activity to the major sigma subunit of RNA polymerase. May be involved in replacement of the RNA polymerase sigma subunit from sigma-70 to sigma-S during the transition from exponential growth to the stationary phase [H]

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family [H]

Homologues:

Organism=Escherichia coli, GI1790428, Length=163, Percent_Identity=35.5828220858896, Blast_Score=99, Evalue=2e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007448 [H]

Pfam domain/function: PF04353 Rsd_AlgQ [H]

EC number: NA

Molecular weight: Translated: 18701; Mature: 18701

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMLRKFKNVQEQWGGSSDIIDHWLDKRQHVIVEYCKLAALQPCTTKAAVSELPSPQALL
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
YFCQELVDYISEGHFKIYDMVMDKWHATGFKATDEINQVYGKIVATTEPLLNFNDQYATV
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
TEYDELLDLDRDLSKVGEVLELRFSLEDQLIQLIADSLAVPPGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MVMLRKFKNVQEQWGGSSDIIDHWLDKRQHVIVEYCKLAALQPCTTKAAVSELPSPQALL
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
YFCQELVDYISEGHFKIYDMVMDKWHATGFKATDEINQVYGKIVATTEPLLNFNDQYATV
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
TEYDELLDLDRDLSKVGEVLELRFSLEDQLIQLIADSLAVPPGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA