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The map label for this gene is yfjD [C]

Identifier: 227080486

GI number: 227080486

Start: 261729

End: 262787

Strand: Reverse

Name: yfjD [C]

Synonym: VCM66_0256

Alternate gene names: 227080486

Gene position: 262787-261729 (Counterclockwise)

Preceding gene: 227080489

Following gene: 227080482

Centisome position: 9.09

GC content: 53.07

Gene sequence:

>1059_bases
ATGTTTCTGCTTGCGATATATATCTCTGTCGCGATTGGCGTATCGTTTATCTGTTCAGTATTAGAAGCGGTACTCTTAAG
TATTACCCCAAGCTATCTAGCCCAGTTACGCCAACAAGGCCACCCTGCGGCTAATCGCCTAGCAGGCCTAAAGGCGGATA
TCGACCGCCCACTCGCCTCGATTCTGACCCTCAATACCATTGCGCACACCATAGGTGCTGCGACGGCTGGCGCACAAGCG
GCGGTGGTGTTTGGTAGCCAGTGGCTTGGCCTGTTCTCTGCTGTGCTCACCCTAGGCATTCTGGTGCTGTCGGAAATCGT
GCCCAAAACCATAGGTGCGACCTACTGGCGTGAACTCGCTCCCCAAGCTTCTCTCGTGCTGCGTTGGATGGTATGGGCGC
TGACGCCGTTCGTCTGGTTCTCAGAGCAGATCACTAAGCGCCTCGCGCGCAAAGTTGAAGCGCCAAAGCTACGTGACGAG
ATCTCCGCGATGGCGATGTTGGCCAATGAAAACGGTGAGTTTGCAGAAGGCGAATCAAAAATGCTGAACAACTTACTGGC
GATTCAAAATGTGCCAGTAACGCAAGTTATGACGCCGCGCCCGGTACTGTTTCGCGTTTCCGCGGATCTAACGATTGATG
AATTTATCGAGCAGCACCGCGATACGCCGTTCTCGCGCCCGCTGATTTACAGCGAAGAGAAAGACAACATTGTCGGCTTT
GTGCACCGCCTTGAGTTGTTTAAAGAGCAGCAAAATGGCCAAGGAAACTTGCTACTGGGTGATGTGATGCGCCCAATCCA
TGTGGTGCTCAACACCTTGAGCTTACCAAAAGCCTTCGACCAGATGATGCAAAAGCGCTTGCAACTGTCAGTCGTGGTAG
ACGAATACGGCTCAGTGCAGGGTTTGCTTACCTTAGAAGACATCTTCGAGCACTTGCTCGGCGAAGAGATTATCGATGAA
GCCGACCGCACAACCGATATGCAGCAACTAGCCACCGAACGCTGGGAGCACTGGAAGCGCCAGCATCGCATGATCGAAAG
CCGCGACGAAGTGGAATAA

Upstream 100 bases:

>100_bases
AGCGATTTTTCTTCATATTCTCCCTGTGCTTTGCGGCCTTTACCGCGAAGATTGTGAGAAGAAAAGAGTTCGAACGTGCA
CTTTAAAACCAAGGAATTTT

Downstream 100 bases:

>100_bases
AAAACGGGAGCTTACGCTCTAATGCCGATCAGTTAAGCAAAAAATGATCGGTTGAACGATGTAAATAATGACGGATAAAG
GCTCTTAGAATTAGCACTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MFLLAIYISVAIGVSFICSVLEAVLLSITPSYLAQLRQQGHPAANRLAGLKADIDRPLASILTLNTIAHTIGAATAGAQA
AVVFGSQWLGLFSAVLTLGILVLSEIVPKTIGATYWRELAPQASLVLRWMVWALTPFVWFSEQITKRLARKVEAPKLRDE
ISAMAMLANENGEFAEGESKMLNNLLAIQNVPVTQVMTPRPVLFRVSADLTIDEFIEQHRDTPFSRPLIYSEEKDNIVGF
VHRLELFKEQQNGQGNLLLGDVMRPIHVVLNTLSLPKAFDQMMQKRLQLSVVVDEYGSVQGLLTLEDIFEHLLGEEIIDE
ADRTTDMQQLATERWEHWKRQHRMIESRDEVE

Sequences:

>Translated_352_residues
MFLLAIYISVAIGVSFICSVLEAVLLSITPSYLAQLRQQGHPAANRLAGLKADIDRPLASILTLNTIAHTIGAATAGAQA
AVVFGSQWLGLFSAVLTLGILVLSEIVPKTIGATYWRELAPQASLVLRWMVWALTPFVWFSEQITKRLARKVEAPKLRDE
ISAMAMLANENGEFAEGESKMLNNLLAIQNVPVTQVMTPRPVLFRVSADLTIDEFIEQHRDTPFSRPLIYSEEKDNIVGF
VHRLELFKEQQNGQGNLLLGDVMRPIHVVLNTLSLPKAFDQMMQKRLQLSVVVDEYGSVQGLLTLEDIFEHLLGEEIIDE
ADRTTDMQQLATERWEHWKRQHRMIESRDEVE
>Mature_352_residues
MFLLAIYISVAIGVSFICSVLEAVLLSITPSYLAQLRQQGHPAANRLAGLKADIDRPLASILTLNTIAHTIGAATAGAQA
AVVFGSQWLGLFSAVLTLGILVLSEIVPKTIGATYWRELAPQASLVLRWMVWALTPFVWFSEQITKRLARKVEAPKLRDE
ISAMAMLANENGEFAEGESKMLNNLLAIQNVPVTQVMTPRPVLFRVSADLTIDEFIEQHRDTPFSRPLIYSEEKDNIVGF
VHRLELFKEQQNGQGNLLLGDVMRPIHVVLNTLSLPKAFDQMMQKRLQLSVVVDEYGSVQGLLTLEDIFEHLLGEEIIDE
ADRTTDMQQLATERWEHWKRQHRMIESRDEVE

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=252, Percent_Identity=23.8095238095238, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI40068053, Length=357, Percent_Identity=21.8487394957983, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI40068055, Length=357, Percent_Identity=21.8487394957983, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI145693175, Length=308, Percent_Identity=23.3766233766234, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1790664, Length=235, Percent_Identity=25.9574468085106, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786879, Length=160, Percent_Identity=28.125, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788119, Length=187, Percent_Identity=29.9465240641711, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082033, Length=198, Percent_Identity=25.2525252525253, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR002550 [H]

Pfam domain/function: PF00571 CBS; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 39539; Mature: 39539

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS00039 DEAD_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLLAIYISVAIGVSFICSVLEAVLLSITPSYLAQLRQQGHPAANRLAGLKADIDRPLAS
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ILTLNTIAHTIGAATAGAQAAVVFGSQWLGLFSAVLTLGILVLSEIVPKTIGATYWRELA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PQASLVLRWMVWALTPFVWFSEQITKRLARKVEAPKLRDEISAMAMLANENGEFAEGESK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHH
MLNNLLAIQNVPVTQVMTPRPVLFRVSADLTIDEFIEQHRDTPFSRPLIYSEEKDNIVGF
HHHHHHHHCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCEEECCCCCHHHHH
VHRLELFKEQQNGQGNLLLGDVMRPIHVVLNTLSLPKAFDQMMQKRLQLSVVVDEYGSVQ
HHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHH
GLLTLEDIFEHLLGEEIIDEADRTTDMQQLATERWEHWKRQHRMIESRDEVE
HEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFLLAIYISVAIGVSFICSVLEAVLLSITPSYLAQLRQQGHPAANRLAGLKADIDRPLAS
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ILTLNTIAHTIGAATAGAQAAVVFGSQWLGLFSAVLTLGILVLSEIVPKTIGATYWRELA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PQASLVLRWMVWALTPFVWFSEQITKRLARKVEAPKLRDEISAMAMLANENGEFAEGESK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHH
MLNNLLAIQNVPVTQVMTPRPVLFRVSADLTIDEFIEQHRDTPFSRPLIYSEEKDNIVGF
HHHHHHHHCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCEEECCCCCHHHHH
VHRLELFKEQQNGQGNLLLGDVMRPIHVVLNTLSLPKAFDQMMQKRLQLSVVVDEYGSVQ
HHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHH
GLLTLEDIFEHLLGEEIIDEADRTTDMQQLATERWEHWKRQHRMIESRDEVE
HEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]