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The map label for this gene is yddE [C]

Identifier: 226949329

GI number: 226949329

Start: 2320148

End: 2320927

Strand: Direct

Name: yddE [C]

Synonym: CLM_2250

Alternate gene names: 226949329

Gene position: 2320148-2320927 (Clockwise)

Preceding gene: 226949325

Following gene: 226949330

Centisome position: 55.84

GC content: 34.36

Gene sequence:

>780_bases
ATGAAATATTATGTTGTTGATGCATTTGCAGAAAAGGTGTTTGAAGGAAATCCAGCTGGTGTATGTATCATGAAGGAATG
GCTATCTGATGAAACCATGCAAAAAATCGCTATTGAGAATAACCTTTCTGAAACAGCATTCGCTGTAAAAGAGGGAGACA
GTTATAACTTAAGATGGTTTACGCCTGGAAAAGAGGTTGATCTTTGTGGTCATGCTACTTTGGCAACAGCTTATGTAATT
GCCAATTATTATGAAAAGAATGTAGACAAAATCAATTTTCAAACAATAAGTGGTGAGCTTATTGTTGTAAAAAAAGGTGA
TCTTTACGAAATGAATTTCCCAAGCAGAATGCCTGAGCCATTTCCATTGACAGAACAAATGATTGAAGCTCTTGGTGTAA
AGCCTTTGGAAGCCTATCTAAGAAGAGATTTAATGTTTGTACTTGAAAATGAAGAAGATGTTCAAAATGCATCACCTGAT
CTTTCTAAATTAGAAAAACTTCCAGATGGTATGGGGGTTTTAATTACTTCGAAAGGTAAAAAGTACGATTTTGTTTCAAG
ATGTTTTTTCCCTAAGATTAAAGTTAATGAAGATCCTGTGTGTGGTTCGGCACATTGTAATTTTATTCCTTATTGGGCAG
AACATCTTGGAAAAGATGAAATGGTAGCAAGACAACTTTCTAATCGTGGTGGAACATTATATTGCAAATATTGTGGAGAC
AAAGTAACTATCAGCGGATCAGCTGCTTTGTATTCTATAGCTGATATTAAAATAAATTAG

Upstream 100 bases:

>100_bases
TAATTGTCTTGCATACAATTATATCATTGAGACCATACATTTACAATGATATACTTACTATCATAGTATGATTTCACCCA
AAAATAAGGAGGTTATTATT

Downstream 100 bases:

>100_bases
AAGAAGAGGTTTGCATATTATGAGGATAGAACAAAAAATTAAAGAATTAGGCATTAAACTTCCTGAACTATCTACTCCCA
AGGCAATGTATGTACCTGTA

Product: phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MKYYVVDAFAEKVFEGNPAGVCIMKEWLSDETMQKIAIENNLSETAFAVKEGDSYNLRWFTPGKEVDLCGHATLATAYVI
ANYYEKNVDKINFQTISGELIVVKKGDLYEMNFPSRMPEPFPLTEQMIEALGVKPLEAYLRRDLMFVLENEEDVQNASPD
LSKLEKLPDGMGVLITSKGKKYDFVSRCFFPKIKVNEDPVCGSAHCNFIPYWAEHLGKDEMVARQLSNRGGTLYCKYCGD
KVTISGSAALYSIADIKIN

Sequences:

>Translated_259_residues
MKYYVVDAFAEKVFEGNPAGVCIMKEWLSDETMQKIAIENNLSETAFAVKEGDSYNLRWFTPGKEVDLCGHATLATAYVI
ANYYEKNVDKINFQTISGELIVVKKGDLYEMNFPSRMPEPFPLTEQMIEALGVKPLEAYLRRDLMFVLENEEDVQNASPD
LSKLEKLPDGMGVLITSKGKKYDFVSRCFFPKIKVNEDPVCGSAHCNFIPYWAEHLGKDEMVARQLSNRGGTLYCKYCGD
KVTISGSAALYSIADIKIN
>Mature_259_residues
MKYYVVDAFAEKVFEGNPAGVCIMKEWLSDETMQKIAIENNLSETAFAVKEGDSYNLRWFTPGKEVDLCGHATLATAYVI
ANYYEKNVDKINFQTISGELIVVKKGDLYEMNFPSRMPEPFPLTEQMIEALGVKPLEAYLRRDLMFVLENEEDVQNASPD
LSKLEKLPDGMGVLITSKGKKYDFVSRCFFPKIKVNEDPVCGSAHCNFIPYWAEHLGKDEMVARQLSNRGGTLYCKYCGD
KVTISGSAALYSIADIKIN

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=278, Percent_Identity=37.410071942446, Blast_Score=157, Evalue=1e-38,
Organism=Homo sapiens, GI74316009, Length=251, Percent_Identity=36.6533864541833, Blast_Score=143, Evalue=2e-34,
Organism=Escherichia coli, GI1787737, Length=291, Percent_Identity=30.9278350515464, Blast_Score=96, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17542160, Length=310, Percent_Identity=33.2258064516129, Blast_Score=145, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17542154, Length=310, Percent_Identity=33.2258064516129, Blast_Score=145, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17542158, Length=316, Percent_Identity=30.6962025316456, Blast_Score=126, Evalue=9e-30,
Organism=Caenorhabditis elegans, GI17542152, Length=316, Percent_Identity=30.6962025316456, Blast_Score=126, Evalue=9e-30,
Organism=Saccharomyces cerevisiae, GI6321818, Length=234, Percent_Identity=30.7692307692308, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29170; Mature: 29170

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYYVVDAFAEKVFEGNPAGVCIMKEWLSDETMQKIAIENNLSETAFAVKEGDSYNLRWF
CEEEEEEHHHHHHHCCCCCCEEEEHHHCCHHHHHHHHHHCCCCHHEEEEECCCCCEEEEE
TPGKEVDLCGHATLATAYVIANYYEKNVDKINFQTISGELIVVKKGDLYEMNFPSRMPEP
CCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCEEEECCCCCCCCC
FPLTEQMIEALGVKPLEAYLRRDLMFVLENEEDVQNASPDLSKLEKLPDGMGVLITSKGK
CCHHHHHHHHHCCCHHHHHHHHCEEEEECCCHHHCCCCCCHHHHHHCCCCCEEEEECCCC
KYDFVSRCFFPKIKVNEDPVCGSAHCNFIPYWAEHLGKDEMVARQLSNRGGTLYCKYCGD
CCHHHHHHCCCCEECCCCCCCCCCCCCEEEHHHHHCCHHHHHHHHHHCCCCEEEEEECCC
KVTISGSAALYSIADIKIN
EEEEECCEEEEEEEEEEEC
>Mature Secondary Structure
MKYYVVDAFAEKVFEGNPAGVCIMKEWLSDETMQKIAIENNLSETAFAVKEGDSYNLRWF
CEEEEEEHHHHHHHCCCCCCEEEEHHHCCHHHHHHHHHHCCCCHHEEEEECCCCCEEEEE
TPGKEVDLCGHATLATAYVIANYYEKNVDKINFQTISGELIVVKKGDLYEMNFPSRMPEP
CCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCEEEECCCCCCCCC
FPLTEQMIEALGVKPLEAYLRRDLMFVLENEEDVQNASPDLSKLEKLPDGMGVLITSKGK
CCHHHHHHHHHCCCHHHHHHHHCEEEEECCCHHHCCCCCCHHHHHHCCCCCEEEEECCCC
KYDFVSRCFFPKIKVNEDPVCGSAHCNFIPYWAEHLGKDEMVARQLSNRGGTLYCKYCGD
CCHHHHHHCCCCEECCCCCCCCCCCCCEEEHHHHHCCHHHHHHHHHHCCCCEEEEEECCC
KVTISGSAALYSIADIKIN
EEEEECCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]