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The map label for this gene is deoC [H]

Identifier: 226948894

GI number: 226948894

Start: 1835409

End: 1836047

Strand: Direct

Name: deoC [H]

Synonym: CLM_1804

Alternate gene names: 226948894

Gene position: 1835409-1836047 (Clockwise)

Preceding gene: 226948893

Following gene: 226948895

Centisome position: 44.17

GC content: 31.3

Gene sequence:

>639_bases
ATGAAATTATCTAAATATATTGATCACACACTATTAAAGCCACAAGCAACAGAAAAAGATATTCTAAAACTTATTGAAGA
AGCTAAAACTTATGATTTTGCATCAGTTTGTGTAAATCCTAGCTGGGTTAAGCTTGCATATGAAAATTTAAAAGATACAG
ATGTTAAGGTTTGTACTGTTGTAGGATTCCCACTTGGAGCAACTTCAACTGCTTCTAAAGTGTATGAAACAAAAGTTGCC
ATTGAAGATGGTGCAGATGAAATAGATATGGTTATTTCTGTTGGACAACTTAAATCAGGGAATGATGAATATGTAAAAGA
AGAAATCAAAAAAATTGTAGAAGCATCAAAGAATAAATTAGTTAAAGTAATTATAGAAACATGCTTATTAACAGAAGAAG
AAAAAGTAAAAGCATGTACTTTATCTAAAGAAGCAGGGGCAGATTATGTGAAAACTTCAACAGGATTTTCAACTGGCGGA
GCAAAACCAGAAGATATTAAATTAATGAGAGAAACAGTTGGTAAAAATATGGGAGTTAAAGCTTCTGGAGGAATTCATAC
TAGAGAAGAAATGGAAGTTATGATTGAAAATGGAGCTACAAGAATTGGTGCAAGTTGTGGAGTAGAACTTGTAAAATAA

Upstream 100 bases:

>100_bases
TCTAATAAGTGCTATTATGAGGATACAAAGAAGCATAAAATAATAAAAGTAAAAAATAATTAATGTTTAATAATAAACAA
AGTGAGAGGGGTTATAAATT

Downstream 100 bases:

>100_bases
ACATAATTAAGAGATGCCTAACTAATTATTTAAATAGAACTCCAAGCTTTCAATATAAAGTAAGTAAATACTAAAATAAG
TAGATGTAAGATGTACTACA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MKLSKYIDHTLLKPQATEKDILKLIEEAKTYDFASVCVNPSWVKLAYENLKDTDVKVCTVVGFPLGATSTASKVYETKVA
IEDGADEIDMVISVGQLKSGNDEYVKEEIKKIVEASKNKLVKVIIETCLLTEEEKVKACTLSKEAGADYVKTSTGFSTGG
AKPEDIKLMRETVGKNMGVKASGGIHTREEMEVMIENGATRIGASCGVELVK

Sequences:

>Translated_212_residues
MKLSKYIDHTLLKPQATEKDILKLIEEAKTYDFASVCVNPSWVKLAYENLKDTDVKVCTVVGFPLGATSTASKVYETKVA
IEDGADEIDMVISVGQLKSGNDEYVKEEIKKIVEASKNKLVKVIIETCLLTEEEKVKACTLSKEAGADYVKTSTGFSTGG
AKPEDIKLMRETVGKNMGVKASGGIHTREEMEVMIENGATRIGASCGVELVK
>Mature_212_residues
MKLSKYIDHTLLKPQATEKDILKLIEEAKTYDFASVCVNPSWVKLAYENLKDTDVKVCTVVGFPLGATSTASKVYETKVA
IEDGADEIDMVISVGQLKSGNDEYVKEEIKKIVEASKNKLVKVIIETCLLTEEEKVKACTLSKEAGADYVKTSTGFSTGG
AKPEDIKLMRETVGKNMGVKASGGIHTREEMEVMIENGATRIGASCGVELVK

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=214, Percent_Identity=32.2429906542056, Blast_Score=78, Evalue=6e-15,
Organism=Escherichia coli, GI1790841, Length=205, Percent_Identity=34.1463414634146, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17533015, Length=209, Percent_Identity=32.0574162679426, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23060; Mature: 23060

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSKYIDHTLLKPQATEKDILKLIEEAKTYDFASVCVNPSWVKLAYENLKDTDVKVCTV
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCCCEEEEEE
VGFPLGATSTASKVYETKVAIEDGADEIDMVISVGQLKSGNDEYVKEEIKKIVEASKNKL
EECCCCCCHHHHHHHHHHEEECCCCCHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHH
VKVIIETCLLTEEEKVKACTLSKEAGADYVKTSTGFSTGGAKPEDIKLMRETVGKNMGVK
HHHHHHHHHCCCCHHHHHHCCCHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCC
ASGGIHTREEMEVMIENGATRIGASCGVELVK
CCCCCCCHHHHHHHHHCCCCEECCCCCCEECC
>Mature Secondary Structure
MKLSKYIDHTLLKPQATEKDILKLIEEAKTYDFASVCVNPSWVKLAYENLKDTDVKVCTV
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCCCEEEEEE
VGFPLGATSTASKVYETKVAIEDGADEIDMVISVGQLKSGNDEYVKEEIKKIVEASKNKL
EECCCCCCHHHHHHHHHHEEECCCCCHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHH
VKVIIETCLLTEEEKVKACTLSKEAGADYVKTSTGFSTGGAKPEDIKLMRETVGKNMGVK
HHHHHHHHHCCCCHHHHHHCCCHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCC
ASGGIHTREEMEVMIENGATRIGASCGVELVK
CCCCCCCHHHHHHHHHCCCCEECCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA