Click here to switch to the map view.

The map label for this gene is deoR [H]

Identifier: 226948893

GI number: 226948893

Start: 1834179

End: 1835117

Strand: Direct

Name: deoR [H]

Synonym: CLM_1803

Alternate gene names: 226948893

Gene position: 1834179-1835117 (Clockwise)

Preceding gene: 226948892

Following gene: 226948894

Centisome position: 44.14

GC content: 30.99

Gene sequence:

>939_bases
ATGTTAAAAGGCAAAGACAGACAAAGTATAGATGTTGCAAGATTATATTATCAATCTGAATATAGTCAACATGAGATTGC
CAATTTACTTAATATTTCTAGACCTACAGTATCAAAACTTTTAAAATATGCTAAGGAAAGTGGTTACGTTACCATTGAAA
TTAATGACCCAATGGATATATCTGATGATTTAGCCTTAACTTTAAAAAATAAGTATGATTTAGAGGAAGTCGCTATTGCT
TATTCTCCATTAAATAACGAGAATGAGATAAAAAATCAGATAGGTCGTGTGGCAGCACAGTATTTACATAATGTTGTTAA
AGATGGAGATACTATTGGGGTAAGTTGGGGAACAACCATGTATGCTGTAGCTACGCAATTAGTGGAAAAAGAATTAAAAG
ATGTTCAAATTGTACAGCTTAAGGGTGGATTAAGCCATACTCGTAGCAATACATATGCCTCAGAGATAAATGAATTATTT
GCAAAAGCATTTCATGCTGAGGGAAGAGCTTTGTTATTACCTGTTATATTTGATACACAAGAATTAAAAGAAATTACAGA
AAAAGATAGCCATATAAATGAAGTAATGCAAATGGGGAAACAAGCTAATATTGCTGTTTTTTCTACAGGTACAGTTGAAG
ATGATGCTCTATTATTTAGATTAGGCTATTTTAATGAAGAAGAAAAAAAGCGTATTCAAAAGTATGCTGTTGGAGATGTA
TGTTCCCGATTTATTGATAGGAATGGTAACATATGTGATGAAAAAATAAATAGTAGAACAGTAGGAATAGATTTAGAAGA
ATTAAAGAAAAAAGAAAGAAGTATTTTAGTTGCTGGTGGAGAGAGAAAACTTAATTCATTACATGTAGCATTAAGCTCAA
AAATAGCTAATACACTAGTAACAGATCAGTTTACCGCTAAACTATTACTTGGAAGATAA

Upstream 100 bases:

>100_bases
ATCTTATTTTTTTATGGATTTAAAGAAAATGCAAAATACATATATATTAGATTTAAAAAAGAAGTTAGGGGAACAGTGAT
GACAAAAGGAGATTTAAATA

Downstream 100 bases:

>100_bases
GTATATAACAAATAATAACAGGCACTATATTTATTCTTTTAGGGTTGAAAGTGGCATTACAAAAGCAAAAATAATAGCAA
ACTTAAAAATGCAATTTTAT

Product: putative deoxyribonucleoside regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MLKGKDRQSIDVARLYYQSEYSQHEIANLLNISRPTVSKLLKYAKESGYVTIEINDPMDISDDLALTLKNKYDLEEVAIA
YSPLNNENEIKNQIGRVAAQYLHNVVKDGDTIGVSWGTTMYAVATQLVEKELKDVQIVQLKGGLSHTRSNTYASEINELF
AKAFHAEGRALLLPVIFDTQELKEITEKDSHINEVMQMGKQANIAVFSTGTVEDDALLFRLGYFNEEEKKRIQKYAVGDV
CSRFIDRNGNICDEKINSRTVGIDLEELKKKERSILVAGGERKLNSLHVALSSKIANTLVTDQFTAKLLLGR

Sequences:

>Translated_312_residues
MLKGKDRQSIDVARLYYQSEYSQHEIANLLNISRPTVSKLLKYAKESGYVTIEINDPMDISDDLALTLKNKYDLEEVAIA
YSPLNNENEIKNQIGRVAAQYLHNVVKDGDTIGVSWGTTMYAVATQLVEKELKDVQIVQLKGGLSHTRSNTYASEINELF
AKAFHAEGRALLLPVIFDTQELKEITEKDSHINEVMQMGKQANIAVFSTGTVEDDALLFRLGYFNEEEKKRIQKYAVGDV
CSRFIDRNGNICDEKINSRTVGIDLEELKKKERSILVAGGERKLNSLHVALSSKIANTLVTDQFTAKLLLGR
>Mature_312_residues
MLKGKDRQSIDVARLYYQSEYSQHEIANLLNISRPTVSKLLKYAKESGYVTIEINDPMDISDDLALTLKNKYDLEEVAIA
YSPLNNENEIKNQIGRVAAQYLHNVVKDGDTIGVSWGTTMYAVATQLVEKELKDVQIVQLKGGLSHTRSNTYASEINELF
AKAFHAEGRALLLPVIFDTQELKEITEKDSHINEVMQMGKQANIAVFSTGTVEDDALLFRLGYFNEEEKKRIQKYAVGDV
CSRFIDRNGNICDEKINSRTVGIDLEELKKKERSILVAGGERKLNSLHVALSSKIANTLVTDQFTAKLLLGR

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=307, Percent_Identity=29.9674267100977, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1787791, Length=311, Percent_Identity=25.7234726688103, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 35063; Mature: 35063

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKGKDRQSIDVARLYYQSEYSQHEIANLLNISRPTVSKLLKYAKESGYVTIEINDPMDI
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEECCCCCC
SDDLALTLKNKYDLEEVAIAYSPLNNENEIKNQIGRVAAQYLHNVVKDGDTIGVSWGTTM
CCCEEEEECCCCCHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
YAVATQLVEKELKDVQIVQLKGGLSHTRSNTYASEINELFAKAFHAEGRALLLPVIFDTQ
HHHHHHHHHHHHCCEEEEEECCCCCHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECHH
ELKEITEKDSHINEVMQMGKQANIAVFSTGTVEDDALLFRLGYFNEEEKKRIQKYAVGDV
HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHEEEECCCCHHHHHHHHHHHHHHH
CSRFIDRNGNICDEKINSRTVGIDLEELKKKERSILVAGGERKLNSLHVALSSKIANTLV
HHHHHHCCCCCCHHCCCCEEECCCHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHH
TDQFTAKLLLGR
HHHHHHHHHCCC
>Mature Secondary Structure
MLKGKDRQSIDVARLYYQSEYSQHEIANLLNISRPTVSKLLKYAKESGYVTIEINDPMDI
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEECCCCCC
SDDLALTLKNKYDLEEVAIAYSPLNNENEIKNQIGRVAAQYLHNVVKDGDTIGVSWGTTM
CCCEEEEECCCCCHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
YAVATQLVEKELKDVQIVQLKGGLSHTRSNTYASEINELFAKAFHAEGRALLLPVIFDTQ
HHHHHHHHHHHHCCEEEEEECCCCCHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECHH
ELKEITEKDSHINEVMQMGKQANIAVFSTGTVEDDALLFRLGYFNEEEKKRIQKYAVGDV
HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHEEEECCCCHHHHHHHHHHHHHHH
CSRFIDRNGNICDEKINSRTVGIDLEELKKKERSILVAGGERKLNSLHVALSSKIANTLV
HHHHHHCCCCCCHHCCCCEEECCCHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHH
TDQFTAKLLLGR
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]