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The map label for this gene is xerC [H]

Identifier: 226948086

GI number: 226948086

Start: 1008584

End: 1009000

Strand: Reverse

Name: xerC [H]

Synonym: CLM_0949

Alternate gene names: 226948086

Gene position: 1009000-1008584 (Counterclockwise)

Preceding gene: 226948093

Following gene: 226948078

Centisome position: 24.28

GC content: 31.65

Gene sequence:

>417_bases
TTGTTTACATCATTCATATATGTAGTGGGAAAGGGTAATAAAAAACGTGAAATTTTCCTAACACCTGCTGCTAAAAAAGC
TATTAATGACTGGTTACATATTAGAAATTCAATTAATGTTAATACCAATGCTTTATTTATATCTAGAAATAGTAACCGTA
TCACTACAAGAGTTATTCAAAATATTGTAAAAAAATATGTTATTACTTCTGGACTTGACCCAAAATCTATATCAACACAC
AAGCTTCGCCATACAGCAGCTACTCTTATGTACAAATATGGTAGGGTAGATATTAGATCTCTTCAACAAATTCTTGGTCA
TGAAAGTGTTGCAACAACTGAAATCTATACCCATATTGATGAGCATCAATTACAATCCGCTGTAAACTCTAATCCCCTTG
CAATGATGTTTAGCTGA

Upstream 100 bases:

>100_bases
ACTAAAGCAATATGTACAACTGATTGAATCATTATTTTCCCCCTTATTCTATTATAATTAATACGCTAATTGACTAATAG
GTAAATTACTATTTATTTGG

Downstream 100 bases:

>100_bases
ACCAAAGAGACATCTAATATCGTGTCTCTTTAAAGAATAGACATAACATGTCCAATTATATGGATAATAGGAAGTTAATA
ACCATAAATATTATCTACAT

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MFTSFIYVVGKGNKKREIFLTPAAKKAINDWLHIRNSINVNTNALFISRNSNRITTRVIQNIVKKYVITSGLDPKSISTH
KLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHIDEHQLQSAVNSNPLAMMFS

Sequences:

>Translated_138_residues
MFTSFIYVVGKGNKKREIFLTPAAKKAINDWLHIRNSINVNTNALFISRNSNRITTRVIQNIVKKYVITSGLDPKSISTH
KLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHIDEHQLQSAVNSNPLAMMFS
>Mature_138_residues
MFTSFIYVVGKGNKKREIFLTPAAKKAINDWLHIRNSINVNTNALFISRNSNRITTRVIQNIVKKYVITSGLDPKSISTH
KLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHIDEHQLQSAVNSNPLAMMFS

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=125, Percent_Identity=36, Blast_Score=87, Evalue=5e-19,
Organism=Escherichia coli, GI1789261, Length=127, Percent_Identity=34.6456692913386, Blast_Score=77, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 15703; Mature: 15703

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTSFIYVVGKGNKKREIFLTPAAKKAINDWLHIRNSINVNTNALFISRNSNRITTRVIQ
CCCEEEEEEECCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHH
NIVKKYVITSGLDPKSISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHID
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH
EHQLQSAVNSNPLAMMFS
HHHHHHHHCCCCEEEEEC
>Mature Secondary Structure
MFTSFIYVVGKGNKKREIFLTPAAKKAINDWLHIRNSINVNTNALFISRNSNRITTRVIQ
CCCEEEEEEECCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHH
NIVKKYVITSGLDPKSISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHID
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH
EHQLQSAVNSNPLAMMFS
HHHHHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]