| Definition | Listeria monocytogenes Clip81459, complete genome. |
|---|---|
| Accession | NC_012488 |
| Length | 2,912,690 |
Click here to switch to the map view.
The map label for this gene is ycjT [H]
Identifier: 226225383
GI number: 226225383
Start: 2887329
End: 2889506
Strand: Reverse
Name: ycjT [H]
Synonym: Lm4b_02806
Alternate gene names: 226225383
Gene position: 2889506-2887329 (Counterclockwise)
Preceding gene: 226225384
Following gene: 226225382
Centisome position: 99.2
GC content: 40.22
Gene sequence:
>2178_bases ATGAAGAAAATAATCGAGAAGGAATTTGCATTAAATTATCTAAATAAATATGGTAGCCAAATGACTGTGGGAAATGGCTA TTTGGGCGTGCGCGGTGCTCTTGAAGAAGAATATCCGGAGCAAGTTCGCGGTATGTATGTGGCGGGGATTTATAATCGTC CGAGCGGTTCGCTGAGTTCGGAACTTGTTAATTTGCCGGATGTGACGCGTTTCCAAGTGATGCTTGATGGGGAAAATTTT TCGATGCAAGCGGGGAAAGTCCATGCTTACGAGCGTTATTTAGATATGAATACAGGAGAATTAATTCGAAAAATTACTTG GGAAAGTAGCGCGGGCAAGAAGTATCAACTGAATTTTCACCGATTTGTTTCAAAAGCAGCAAAGCACGTCATTGCTGCTA AAGTGGAGATAATGCCTTTGAGCGGTGCGGCGAAAGTCAAAGTAAAAACTGGTATTGATGCGCAACAAACTAATTTTGGA ACACAGCAGCTGGCGGAGTTGAGTCTACGAATTTTTGATGAGAAGTTGATGGTTGGCGAATATGAGACCATCGAGAGCAA ACAGCATATTACAATAGCAACAAAAGTGAATAAAAAAGGGATTTTCACTGCGAAAAACAGACAATTAATGACCGAAGTAG AGCAAGAAATCGCTGAAAATCAACTATTTACTTTGGAGAAAATAAGCATGGTTAAAACATCCCTGGATCAAGTGGATGCG GAACTTCCAAATACGACTTATGCAGAATTGAAAAGAGCTTCGGAAACTTTATGGGCAGATTTTTGGGAGCATGCGGGTGT CCGTGTTGAGAGCACGAATGATTTTGACCAATTTGCACTAGATTTTGCGTGCTATCACTTAGAAATTATGACGCCGAAAG ATGATTTTCGTTGTAGTGTTGGTGCGAAGGGACTTACCGGAGAAGGTTACAAGGGGCATGTTTTTTGGGATACAGAAATT TTTATTATGCCATTTTTCCTTTATAATAAGCCGGAAATTGCCAAACAATTATTAAAATATCGCTACCTTCATTTGAAAGA AGCGAAAGAAAAGGCAACGAAAAACGGCTATAATGGGGCGCTTTTTCCGTGGGAAAGTGCATTCTCTGGCGAAGAAGAAA CGCCTGAATTTGCAGCGATTAATATTCGAACTGGCACACGTCAAAAAGTAGCGTCGGCGATTTCGGAGCATCATTTAGTT GCGGATATTGCTTATGCGGTTTGTGAATATGAAACGGCGACTAAGGATGCTCAGTTTATGAAAGAGTGTGGTTCAGAGCT GCTCCTTGAAACAGCGGAATTTTGGCTAAGCCGTGCAACTAATCGTAATGGACGACTGGAAATCCTTGATGTGATTGGTC CGGACGAATACACCGAGCATATCGATAATAATACTTATACGAATTATATGGCACACTATAATGTAGAAAAAGCACTAGAC TGGAATAAAGATAATGCCGATTTTGTAGCCCGTGCAGAAGCTTTTCTTGAAAAAATCTATTTACCTGTCGCAAATGAGTC TGGCTTAATTCCGCAAGATGATACTTTCTTAGAAAAAGATTGGATAAATTTGGATAAATATAAGGCGGCACAAGGAACAC AAGGGATTCTACTAGATTATTCTCGTCAAGAAGTGAACGAACTACAAATCTTAAAGCAAGCAGATTTAGTCATGTTGTTT TACCTGTTTCCGAGGATGTTTGCGCCAGATGCTGTGAAGCAGAATTTGGATTACTATGAAAAACGAACAATTCATGATTC TTCTTTAAGTAAAGCAATCCACGCAATTGTAGAAAATCGAACTGGTAATCGCGCACAAGCTTATCAATTTTTCCAAGAAG CGTGTTTAATTGACCTTGGAAATGAGCCGCATTCATCGGATGACGGGCTCCATGCGGCCTCACTCGGCGCAATATGGTTG GCGGTGGTTTTTGGATTTGCGGGTATAGATACTAGTGGAGAACTACTTGAAATCGCGCCAAACATACCGGATTCCTGGCA ATCTGTGGCATTTGAATTCTCTTGGAAAGGTGAAAAAATCTTGGTAGAAATTGCGCAAAACAGATTACACCTTTCAAAAA GCACAAAAAGCGTGCTAGAATTAGTTATTCACGGAGAAAAACATCAATTAACAGATACATTAACTATTAAGTTGGATCAG AAGGATGTGTCTTTATGA
Upstream 100 bases:
>100_bases CTGGAAAAGTGGAACTTGCTGGCGCTGAACAAGGTTATATCATACAAAAAATTGTTGAAAGTTTATACGAATCGGCAGAA AAAGGTGAGAGTGTTTCTTT
Downstream 100 bases:
>100_bases AAATTGTCATTGCACCGGATTCATTCAAAGAAAGTTTGACGGCGCATGAGGTGGCAGAGTATATTAAAGAGGGCTTTCAA GAAATTTATCCGGATGCTGA
Product: maltose phosphorylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 725; Mature: 725
Protein sequence:
>725_residues MKKIIEKEFALNYLNKYGSQMTVGNGYLGVRGALEEEYPEQVRGMYVAGIYNRPSGSLSSELVNLPDVTRFQVMLDGENF SMQAGKVHAYERYLDMNTGELIRKITWESSAGKKYQLNFHRFVSKAAKHVIAAKVEIMPLSGAAKVKVKTGIDAQQTNFG TQQLAELSLRIFDEKLMVGEYETIESKQHITIATKVNKKGIFTAKNRQLMTEVEQEIAENQLFTLEKISMVKTSLDQVDA ELPNTTYAELKRASETLWADFWEHAGVRVESTNDFDQFALDFACYHLEIMTPKDDFRCSVGAKGLTGEGYKGHVFWDTEI FIMPFFLYNKPEIAKQLLKYRYLHLKEAKEKATKNGYNGALFPWESAFSGEEETPEFAAINIRTGTRQKVASAISEHHLV ADIAYAVCEYETATKDAQFMKECGSELLLETAEFWLSRATNRNGRLEILDVIGPDEYTEHIDNNTYTNYMAHYNVEKALD WNKDNADFVARAEAFLEKIYLPVANESGLIPQDDTFLEKDWINLDKYKAAQGTQGILLDYSRQEVNELQILKQADLVMLF YLFPRMFAPDAVKQNLDYYEKRTIHDSSLSKAIHAIVENRTGNRAQAYQFFQEACLIDLGNEPHSSDDGLHAASLGAIWL AVVFGFAGIDTSGELLEIAPNIPDSWQSVAFEFSWKGEKILVEIAQNRLHLSKSTKSVLELVIHGEKHQLTDTLTIKLDQ KDVSL
Sequences:
>Translated_725_residues MKKIIEKEFALNYLNKYGSQMTVGNGYLGVRGALEEEYPEQVRGMYVAGIYNRPSGSLSSELVNLPDVTRFQVMLDGENF SMQAGKVHAYERYLDMNTGELIRKITWESSAGKKYQLNFHRFVSKAAKHVIAAKVEIMPLSGAAKVKVKTGIDAQQTNFG TQQLAELSLRIFDEKLMVGEYETIESKQHITIATKVNKKGIFTAKNRQLMTEVEQEIAENQLFTLEKISMVKTSLDQVDA ELPNTTYAELKRASETLWADFWEHAGVRVESTNDFDQFALDFACYHLEIMTPKDDFRCSVGAKGLTGEGYKGHVFWDTEI FIMPFFLYNKPEIAKQLLKYRYLHLKEAKEKATKNGYNGALFPWESAFSGEEETPEFAAINIRTGTRQKVASAISEHHLV ADIAYAVCEYETATKDAQFMKECGSELLLETAEFWLSRATNRNGRLEILDVIGPDEYTEHIDNNTYTNYMAHYNVEKALD WNKDNADFVARAEAFLEKIYLPVANESGLIPQDDTFLEKDWINLDKYKAAQGTQGILLDYSRQEVNELQILKQADLVMLF YLFPRMFAPDAVKQNLDYYEKRTIHDSSLSKAIHAIVENRTGNRAQAYQFFQEACLIDLGNEPHSSDDGLHAASLGAIWL AVVFGFAGIDTSGELLEIAPNIPDSWQSVAFEFSWKGEKILVEIAQNRLHLSKSTKSVLELVIHGEKHQLTDTLTIKLDQ KDVSL >Mature_725_residues MKKIIEKEFALNYLNKYGSQMTVGNGYLGVRGALEEEYPEQVRGMYVAGIYNRPSGSLSSELVNLPDVTRFQVMLDGENF SMQAGKVHAYERYLDMNTGELIRKITWESSAGKKYQLNFHRFVSKAAKHVIAAKVEIMPLSGAAKVKVKTGIDAQQTNFG TQQLAELSLRIFDEKLMVGEYETIESKQHITIATKVNKKGIFTAKNRQLMTEVEQEIAENQLFTLEKISMVKTSLDQVDA ELPNTTYAELKRASETLWADFWEHAGVRVESTNDFDQFALDFACYHLEIMTPKDDFRCSVGAKGLTGEGYKGHVFWDTEI FIMPFFLYNKPEIAKQLLKYRYLHLKEAKEKATKNGYNGALFPWESAFSGEEETPEFAAINIRTGTRQKVASAISEHHLV ADIAYAVCEYETATKDAQFMKECGSELLLETAEFWLSRATNRNGRLEILDVIGPDEYTEHIDNNTYTNYMAHYNVEKALD WNKDNADFVARAEAFLEKIYLPVANESGLIPQDDTFLEKDWINLDKYKAAQGTQGILLDYSRQEVNELQILKQADLVMLF YLFPRMFAPDAVKQNLDYYEKRTIHDSSLSKAIHAIVENRTGNRAQAYQFFQEACLIDLGNEPHSSDDGLHAASLGAIWL AVVFGFAGIDTSGELLEIAPNIPDSWQSVAFEFSWKGEKILVEIAQNRLHLSKSTKSVLELVIHGEKHQLTDTLTIKLDQ KDVSL
Specific function: Unknown
COG id: COG1554
COG function: function code G; Trehalose and maltose hydrolases (possible phosphorylases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 65 family [H]
Homologues:
Organism=Homo sapiens, GI187829418, Length=584, Percent_Identity=24.6575342465753, Blast_Score=132, Evalue=1e-30, Organism=Escherichia coli, GI1787575, Length=719, Percent_Identity=48.8178025034771, Blast_Score=691, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6325283, Length=442, Percent_Identity=22.8506787330317, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24583760, Length=165, Percent_Identity=34.5454545454545, Blast_Score=98, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR012341 - InterPro: IPR011013 - InterPro: IPR005194 - InterPro: IPR005195 - InterPro: IPR005196 - InterPro: IPR017045 [H]
Pfam domain/function: PF03633 Glyco_hydro_65C; PF03632 Glyco_hydro_65m; PF03636 Glyco_hydro_65N [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 82265; Mature: 82265
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIIEKEFALNYLNKYGSQMTVGNGYLGVRGALEEEYPEQVRGMYVAGIYNRPSGSLSS CCHHHHHHHHHHHHHHCCCEEEECCCCEECCCCHHHHHHHHHCCEEEEEEEECCCCCHHH ELVNLPDVTRFQVMLDGENFSMQAGKVHAYERYLDMNTGELIRKITWESSAGKKYQLNFH HHCCCCCCEEEEEEECCCCCEECCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEHHH RFVSKAAKHVIAAKVEIMPLSGAAKVKVKTGIDAQQTNFGTQQLAELSLRIFDEKLMVGE HHHHHHHHHHHHEEEEEEECCCCEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHCCCC YETIESKQHITIATKVNKKGIFTAKNRQLMTEVEQEIAENQLFTLEKISMVKTSLDQVDA HHHHCCCCEEEEEEEECCCCEEEECCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHH ELPNTTYAELKRASETLWADFWEHAGVRVESTNDFDQFALDFACYHLEIMTPKDDFRCSV CCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHEEEEEEEEECCCCCCEEEC GAKGLTGEGYKGHVFWDTEIFIMPFFLYNKPEIAKQLLKYRYLHLKEAKEKATKNGYNGA CCCCCCCCCEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC LFPWESAFSGEEETPEFAAINIRTGTRQKVASAISEHHLVADIAYAVCEYETATKDAQFM CCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHHHHH KECGSELLLETAEFWLSRATNRNGRLEILDVIGPDEYTEHIDNNTYTNYMAHYNVEKALD HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCCCEECEEEEECHHHHCC WNKDNADFVARAEAFLEKIYLPVANESGLIPQDDTFLEKDWINLDKYKAAQGTQGILLDY CCCCCHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCHHHHCCCCHHHCCCCCCCCEEEEC SRQEVNELQILKQADLVMLFYLFPRMFAPDAVKQNLDYYEKRTIHDSSLSKAIHAIVENR CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHCCCHHHHHHHHHHHHHCC TGNRAQAYQFFQEACLIDLGNEPHSSDDGLHAASLGAIWLAVVFGFAGIDTSGELLEIAP CCCHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECC NIPDSWQSVAFEFSWKGEKILVEIAQNRLHLSKSTKSVLELVIHGEKHQLTDTLTIKLDQ CCCCCHHHEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC KDVSL CCCCC >Mature Secondary Structure MKKIIEKEFALNYLNKYGSQMTVGNGYLGVRGALEEEYPEQVRGMYVAGIYNRPSGSLSS CCHHHHHHHHHHHHHHCCCEEEECCCCEECCCCHHHHHHHHHCCEEEEEEEECCCCCHHH ELVNLPDVTRFQVMLDGENFSMQAGKVHAYERYLDMNTGELIRKITWESSAGKKYQLNFH HHCCCCCCEEEEEEECCCCCEECCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEHHH RFVSKAAKHVIAAKVEIMPLSGAAKVKVKTGIDAQQTNFGTQQLAELSLRIFDEKLMVGE HHHHHHHHHHHHEEEEEEECCCCEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHCCCC YETIESKQHITIATKVNKKGIFTAKNRQLMTEVEQEIAENQLFTLEKISMVKTSLDQVDA HHHHCCCCEEEEEEEECCCCEEEECCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHH ELPNTTYAELKRASETLWADFWEHAGVRVESTNDFDQFALDFACYHLEIMTPKDDFRCSV CCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHEEEEEEEEECCCCCCEEEC GAKGLTGEGYKGHVFWDTEIFIMPFFLYNKPEIAKQLLKYRYLHLKEAKEKATKNGYNGA CCCCCCCCCEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC LFPWESAFSGEEETPEFAAINIRTGTRQKVASAISEHHLVADIAYAVCEYETATKDAQFM CCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHHHHH KECGSELLLETAEFWLSRATNRNGRLEILDVIGPDEYTEHIDNNTYTNYMAHYNVEKALD HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCCCEECEEEEECHHHHCC WNKDNADFVARAEAFLEKIYLPVANESGLIPQDDTFLEKDWINLDKYKAAQGTQGILLDY CCCCCHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCHHHHCCCCHHHCCCCCCCCEEEEC SRQEVNELQILKQADLVMLFYLFPRMFAPDAVKQNLDYYEKRTIHDSSLSKAIHAIVENR CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHCCCHHHHHHHHHHHHHCC TGNRAQAYQFFQEACLIDLGNEPHSSDDGLHAASLGAIWLAVVFGFAGIDTSGELLEIAP CCCHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECC NIPDSWQSVAFEFSWKGEKILVEIAQNRLHLSKSTKSVLELVIHGEKHQLTDTLTIKLDQ CCCCCHHHEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC KDVSL CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]