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The map label for this gene is ydiF [H]

Identifier: 226225312

GI number: 226225312

Start: 2812815

End: 2814425

Strand: Reverse

Name: ydiF [H]

Synonym: Lm4b_02735

Alternate gene names: 226225312

Gene position: 2814425-2812815 (Counterclockwise)

Preceding gene: 226225318

Following gene: 226225311

Centisome position: 96.63

GC content: 40.47

Gene sequence:

>1611_bases
ATGACAATAGTAGCAATGAATGATGTAGTTAAAAGTTTTACCGGAGATATTATTTTAGAGAAAGTATCACTTCAATTAGA
AGAAGGTGAGCGCGTCGGTTTAATTGGTCGTAATGGCGAAGGAAAAAGTACTATTTTGAAGATTTTAAAAGGAACTGAGG
GCGTTGATAGCGGGATTGTGACGAGCAAAAAGGGCGCGAAAATTGGGCTTTTAGAGCAATTATCGACGGTGGATCCCAAT
ATAATAGTAGAACAATATTTACGAACTAGTTTTGGTGAGTTAGAGGAGCTGGAAAAAGAATTACGAGCATTAGAAGGAGA
AATGGCAACAAATTCCAGCGAAAAATTAATGAACCGCTACGGAGATAAAATGGCTTTATTTGGCGAGCTTGGCGGCTATG
AGATGGATGCCAATTTGAATAAAGTGGTGAATGGGCTTGGTATTGGATTGCTACTGTCGCAACGATGGGGAGACTTGAGT
GGTGGTGAGAAGACGAAGGCTGCATTAGCGCATTTATTATTACAGAAAACAGATTTATTACTCTTAGATGAACCGACGAA
CCATTTGGATTTGATGGCGGTAGAATGGCTGACCGCGTTTTTACAACATTATTCGGGAACCGTATTAGTTGTATCTCATG
ATCGCTACTTTTTAGATGAAGTAGTCGGGAAAATGGTGGAGCTTGAGAACCGCGAATTAATCGTTTATCATACGAATTTT
TCTGGATATTTGAAAGAACGAGAAGAACGGCTATTGCGGGAATTCCAAGATTACAAAGACCAACAAAAGAAAATCAAAAA
GATGCAGCAAGCCATCAAACGATTGCGCCAGTGGGCAATGCAAGCCAATCCGCCAAATGATGCCATGTTCCGAAGGGCGA
AAAACATGGAACGCGCATTAGAACGGATGGAAAAAGTAAAGCGTCCAGTGTTAACGCAAAAACAAATGCAATTACAATTC
GATGAAGCTGGTCGAAGTGGACAAGAAGTTGTGGTTATGGAAAACTTAAGCAAGTCATTTAGCGAAAAAGCAATCGTACA
AGATGTTTCTTTGCAAATTAGGCAAGGAGAACGAGTAGCGATTATCGGTGAAAACGGCGCCGGCAAATCTACTTTGCTTA
AAATAATGGAAGGGAAAGTTGTTCCTGATGTTGGCATGATTAAGGTTGGTGCAAGTGTGAAAATCGCGTCGCTTTCTCAG
CAAATGGAAGAGCTGAATGAAAAGCTGACTGTACTGGATGCATTTCGGGATAAGGTTGCTGTGACAGAAGGAGAAGCACG
ACAAATGCTAGCAGGCTTCATGTTTTATGGAGAGATGGTTTTCCGAAAAGTAGGGAACATTAGCGGCGGAGAACGTATGC
GACTTAGGTTAGCGCAATTTATTAATATGCCAGTGAATACGCTGATACTTGATGAGCCGACTAACCATTTAGATATCGCC
TCGCGTGAAATTTTAGAAGAAGCAATTCGAGCATTTAGCGGCACAATTATCACTGTATCGCATGATCGCTATTTTATTGA
TCAGCTATGTTCTAAAGTAATTTGGCTGGAGAATAAACAATTAACCGTTTATGAAGGTAATTACAGTTATGCAACTAGTA
AGCGAAGATAA

Upstream 100 bases:

>100_bases
TAATTGGCGTCGGGCGCTTGTCTGACGCTTTTTTTGTTGTCTGAAAAATTGTTTCACGTGAAACAATTTGCCATGCTTCC
TTGGATAAATGGAGGATAAA

Downstream 100 bases:

>100_bases
TCGACTTGCTGGAAATCACTTTCAAAATAAATTAGAATGAAGAAAAGAGGTGATGGTATGGAGATAACAGTTGTAAAAGG
TGATATTACGGAACAAGATG

Product: ABC transporter (ATP-binding protein)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 535

Protein sequence:

>536_residues
MTIVAMNDVVKSFTGDIILEKVSLQLEEGERVGLIGRNGEGKSTILKILKGTEGVDSGIVTSKKGAKIGLLEQLSTVDPN
IIVEQYLRTSFGELEELEKELRALEGEMATNSSEKLMNRYGDKMALFGELGGYEMDANLNKVVNGLGIGLLLSQRWGDLS
GGEKTKAALAHLLLQKTDLLLLDEPTNHLDLMAVEWLTAFLQHYSGTVLVVSHDRYFLDEVVGKMVELENRELIVYHTNF
SGYLKEREERLLREFQDYKDQQKKIKKMQQAIKRLRQWAMQANPPNDAMFRRAKNMERALERMEKVKRPVLTQKQMQLQF
DEAGRSGQEVVVMENLSKSFSEKAIVQDVSLQIRQGERVAIIGENGAGKSTLLKIMEGKVVPDVGMIKVGASVKIASLSQ
QMEELNEKLTVLDAFRDKVAVTEGEARQMLAGFMFYGEMVFRKVGNISGGERMRLRLAQFINMPVNTLILDEPTNHLDIA
SREILEEAIRAFSGTIITVSHDRYFIDQLCSKVIWLENKQLTVYEGNYSYATSKRR

Sequences:

>Translated_536_residues
MTIVAMNDVVKSFTGDIILEKVSLQLEEGERVGLIGRNGEGKSTILKILKGTEGVDSGIVTSKKGAKIGLLEQLSTVDPN
IIVEQYLRTSFGELEELEKELRALEGEMATNSSEKLMNRYGDKMALFGELGGYEMDANLNKVVNGLGIGLLLSQRWGDLS
GGEKTKAALAHLLLQKTDLLLLDEPTNHLDLMAVEWLTAFLQHYSGTVLVVSHDRYFLDEVVGKMVELENRELIVYHTNF
SGYLKEREERLLREFQDYKDQQKKIKKMQQAIKRLRQWAMQANPPNDAMFRRAKNMERALERMEKVKRPVLTQKQMQLQF
DEAGRSGQEVVVMENLSKSFSEKAIVQDVSLQIRQGERVAIIGENGAGKSTLLKIMEGKVVPDVGMIKVGASVKIASLSQ
QMEELNEKLTVLDAFRDKVAVTEGEARQMLAGFMFYGEMVFRKVGNISGGERMRLRLAQFINMPVNTLILDEPTNHLDIA
SREILEEAIRAFSGTIITVSHDRYFIDQLCSKVIWLENKQLTVYEGNYSYATSKRR
>Mature_535_residues
TIVAMNDVVKSFTGDIILEKVSLQLEEGERVGLIGRNGEGKSTILKILKGTEGVDSGIVTSKKGAKIGLLEQLSTVDPNI
IVEQYLRTSFGELEELEKELRALEGEMATNSSEKLMNRYGDKMALFGELGGYEMDANLNKVVNGLGIGLLLSQRWGDLSG
GEKTKAALAHLLLQKTDLLLLDEPTNHLDLMAVEWLTAFLQHYSGTVLVVSHDRYFLDEVVGKMVELENRELIVYHTNFS
GYLKEREERLLREFQDYKDQQKKIKKMQQAIKRLRQWAMQANPPNDAMFRRAKNMERALERMEKVKRPVLTQKQMQLQFD
EAGRSGQEVVVMENLSKSFSEKAIVQDVSLQIRQGERVAIIGENGAGKSTLLKIMEGKVVPDVGMIKVGASVKIASLSQQ
MEELNEKLTVLDAFRDKVAVTEGEARQMLAGFMFYGEMVFRKVGNISGGERMRLRLAQFINMPVNTLILDEPTNHLDIAS
REILEEAIRAFSGTIITVSHDRYFIDQLCSKVIWLENKQLTVYEGNYSYATSKRR

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=530, Percent_Identity=31.6981132075472, Blast_Score=231, Evalue=2e-60,
Organism=Homo sapiens, GI10947137, Length=534, Percent_Identity=29.7752808988764, Blast_Score=201, Evalue=2e-51,
Organism=Homo sapiens, GI27881506, Length=534, Percent_Identity=29.7752808988764, Blast_Score=200, Evalue=3e-51,
Organism=Homo sapiens, GI10947135, Length=526, Percent_Identity=28.7072243346008, Blast_Score=175, Evalue=1e-43,
Organism=Homo sapiens, GI69354671, Length=537, Percent_Identity=28.8640595903166, Blast_Score=174, Evalue=2e-43,
Organism=Escherichia coli, GI2367384, Length=530, Percent_Identity=33.5849056603774, Blast_Score=285, Evalue=4e-78,
Organism=Escherichia coli, GI1787182, Length=542, Percent_Identity=33.0258302583026, Blast_Score=271, Evalue=1e-73,
Organism=Escherichia coli, GI1789751, Length=515, Percent_Identity=30.6796116504854, Blast_Score=260, Evalue=2e-70,
Organism=Escherichia coli, GI1787041, Length=542, Percent_Identity=30.0738007380074, Blast_Score=240, Evalue=2e-64,
Organism=Escherichia coli, GI1788165, Length=196, Percent_Identity=30.1020408163265, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI87081791, Length=190, Percent_Identity=32.1052631578947, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87081782, Length=217, Percent_Identity=29.0322580645161, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1790739, Length=216, Percent_Identity=28.2407407407407, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788225, Length=219, Percent_Identity=27.3972602739726, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1786345, Length=219, Percent_Identity=27.3972602739726, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787758, Length=155, Percent_Identity=28.3870967741935, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788761, Length=205, Percent_Identity=26.8292682926829, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI87081709, Length=197, Percent_Identity=28.4263959390863, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1789891, Length=207, Percent_Identity=24.1545893719807, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1786253, Length=172, Percent_Identity=31.3953488372093, Blast_Score=63, Evalue=6e-11,
Organism=Escherichia coli, GI1790467, Length=205, Percent_Identity=26.3414634146341, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=511, Percent_Identity=31.8982387475538, Blast_Score=226, Evalue=2e-59,
Organism=Caenorhabditis elegans, GI17555318, Length=539, Percent_Identity=29.4990723562152, Blast_Score=223, Evalue=2e-58,
Organism=Caenorhabditis elegans, GI17559834, Length=527, Percent_Identity=28.842504743833, Blast_Score=214, Evalue=8e-56,
Organism=Caenorhabditis elegans, GI193211017, Length=301, Percent_Identity=25.5813953488372, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=301, Percent_Identity=25.5813953488372, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=301, Percent_Identity=25.5813953488372, Blast_Score=70, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6320874, Length=542, Percent_Identity=29.520295202952, Blast_Score=213, Evalue=7e-56,
Organism=Saccharomyces cerevisiae, GI6321121, Length=552, Percent_Identity=30.2536231884058, Blast_Score=207, Evalue=3e-54,
Organism=Saccharomyces cerevisiae, GI6325030, Length=410, Percent_Identity=27.8048780487805, Blast_Score=139, Evalue=9e-34,
Organism=Saccharomyces cerevisiae, GI6323278, Length=390, Percent_Identity=26.4102564102564, Blast_Score=115, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6324314, Length=245, Percent_Identity=28.9795918367347, Blast_Score=107, Evalue=7e-24,
Organism=Saccharomyces cerevisiae, GI6320296, Length=200, Percent_Identity=26.5, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24666836, Length=524, Percent_Identity=30.9160305343511, Blast_Score=225, Evalue=5e-59,
Organism=Drosophila melanogaster, GI24642252, Length=535, Percent_Identity=29.9065420560748, Blast_Score=217, Evalue=1e-56,
Organism=Drosophila melanogaster, GI18859989, Length=535, Percent_Identity=29.9065420560748, Blast_Score=217, Evalue=1e-56,
Organism=Drosophila melanogaster, GI24641342, Length=531, Percent_Identity=27.4952919020716, Blast_Score=192, Evalue=7e-49,
Organism=Drosophila melanogaster, GI116007184, Length=213, Percent_Identity=30.0469483568075, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221500365, Length=213, Percent_Identity=30.0469483568075, Blast_Score=74, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28574259, Length=171, Percent_Identity=25.7309941520468, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 60511; Mature: 60380

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIVAMNDVVKSFTGDIILEKVSLQLEEGERVGLIGRNGEGKSTILKILKGTEGVDSGIV
CEEEEHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCE
TSKKGAKIGLLEQLSTVDPNIIVEQYLRTSFGELEELEKELRALEGEMATNSSEKLMNRY
ECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHC
GDKMALFGELGGYEMDANLNKVVNGLGIGLLLSQRWGDLSGGEKTKAALAHLLLQKTDLL
CCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEE
LLDEPTNHLDLMAVEWLTAFLQHYSGTVLVVSHDRYFLDEVVGKMVELENRELIVYHTNF
EEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCC
SGYLKEREERLLREFQDYKDQQKKIKKMQQAIKRLRQWAMQANPPNDAMFRRAKNMERAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ERMEKVKRPVLTQKQMQLQFDEAGRSGQEVVVMENLSKSFSEKAIVQDVSLQIRQGERVA
HHHHHHHCCHHCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHEECCCEEE
IIGENGAGKSTLLKIMEGKVVPDVGMIKVGASVKIASLSQQMEELNEKLTVLDAFRDKVA
EEECCCCCHHHHHHHHCCCCCCCCCEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHC
VTEGEARQMLAGFMFYGEMVFRKVGNISGGERMRLRLAQFINMPVNTLILDEPTNHLDIA
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
SREILEEAIRAFSGTIITVSHDRYFIDQLCSKVIWLENKQLTVYEGNYSYATSKRR
HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHEECCCEEEEEECCCEECCCCCC
>Mature Secondary Structure 
TIVAMNDVVKSFTGDIILEKVSLQLEEGERVGLIGRNGEGKSTILKILKGTEGVDSGIV
EEEEHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCE
TSKKGAKIGLLEQLSTVDPNIIVEQYLRTSFGELEELEKELRALEGEMATNSSEKLMNRY
ECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHC
GDKMALFGELGGYEMDANLNKVVNGLGIGLLLSQRWGDLSGGEKTKAALAHLLLQKTDLL
CCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEE
LLDEPTNHLDLMAVEWLTAFLQHYSGTVLVVSHDRYFLDEVVGKMVELENRELIVYHTNF
EEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCC
SGYLKEREERLLREFQDYKDQQKKIKKMQQAIKRLRQWAMQANPPNDAMFRRAKNMERAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ERMEKVKRPVLTQKQMQLQFDEAGRSGQEVVVMENLSKSFSEKAIVQDVSLQIRQGERVA
HHHHHHHCCHHCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHEECCCEEE
IIGENGAGKSTLLKIMEGKVVPDVGMIKVGASVKIASLSQQMEELNEKLTVLDAFRDKVA
EEECCCCCHHHHHHHHCCCCCCCCCEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHC
VTEGEARQMLAGFMFYGEMVFRKVGNISGGERMRLRLAQFINMPVNTLILDEPTNHLDIA
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
SREILEEAIRAFSGTIITVSHDRYFIDQLCSKVIWLENKQLTVYEGNYSYATSKRR
HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHEECCCEEEEEECCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]