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The map label for this gene is ymdB [C]

Identifier: 226225311

GI number: 226225311

Start: 2812227

End: 2812757

Strand: Reverse

Name: ymdB [C]

Synonym: Lm4b_02734

Alternate gene names: 226225311

Gene position: 2812757-2812227 (Counterclockwise)

Preceding gene: 226225312

Following gene: 226225310

Centisome position: 96.57

GC content: 41.43

Gene sequence:

>531_bases
ATGGAGATAACAGTTGTAAAAGGTGATATTACGGAACAAGATGTAGATGTCATTGTAAATGCTGCTAACCCCGGACTTTT
AGGTGGCGGCGGAGTGGATGGCGCTATCCATCAAGCGGCGGGTCCGGATTTATTAAAAGAATGTCAAGAGGTTATTAATC
GCATTGGGACTTGTCCTGCGGGTGAGGCGGTCATTACGTCTGCCGGCGATTTACAAGCAAGTTACATTATTCATGCTGTA
GGTCCGATTTGGAAAGACGGAGAGCATCAAGAAGCGAATAAACTGGCATCTTGTTATTGGAAAGCGCTAGATTTAGCGGC
TGGAAAAGAATTAACTTCGATTGCATTTCCTAATATTTCTACGGGTGTGTATGGTTTTCCTAAAAAACTAGCAGCTGAGG
TAGCGCTTTATACCGTTCGCAAATGGGCGGAAGAAGAGTATGACACAAGTATTGAAGAAATACGCTTTGTTTGTTTCGAT
GAAGAAAATTTGAAGTTATACAACAAATTAATAAACAGTGAAGTCGTTTAA

Upstream 100 bases:

>100_bases
TTATGAAGGTAATTACAGTTATGCAACTAGTAAGCGAAGATAATCGACTTGCTGGAAATCACTTTCAAAATAAATTAGAA
TGAAGAAAAGAGGTGATGGT

Downstream 100 bases:

>100_bases
GATAACAATCTTAGGCGGCTTTTTCAAATGTTTCACGTGAAACATTTTTTACTATATTTTCTGAATAAAACAACAACGGA
AAACCTTCTTGACATAGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MEITVVKGDITEQDVDVIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGTCPAGEAVITSAGDLQASYIIHAV
GPIWKDGEHQEANKLASCYWKALDLAAGKELTSIAFPNISTGVYGFPKKLAAEVALYTVRKWAEEEYDTSIEEIRFVCFD
EENLKLYNKLINSEVV

Sequences:

>Translated_176_residues
MEITVVKGDITEQDVDVIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGTCPAGEAVITSAGDLQASYIIHAV
GPIWKDGEHQEANKLASCYWKALDLAAGKELTSIAFPNISTGVYGFPKKLAAEVALYTVRKWAEEEYDTSIEEIRFVCFD
EENLKLYNKLINSEVV
>Mature_176_residues
MEITVVKGDITEQDVDVIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGTCPAGEAVITSAGDLQASYIIHAV
GPIWKDGEHQEANKLASCYWKALDLAAGKELTSIAFPNISTGVYGFPKKLAAEVALYTVRKWAEEEYDTSIEEIRFVCFD
EENLKLYNKLINSEVV

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain

Homologues:

Organism=Homo sapiens, GI117968621, Length=173, Percent_Identity=46.8208092485549, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI13569840, Length=171, Percent_Identity=44.4444444444444, Blast_Score=144, Evalue=4e-35,
Organism=Homo sapiens, GI154813199, Length=132, Percent_Identity=39.3939393939394, Blast_Score=92, Evalue=2e-19,
Organism=Homo sapiens, GI226371718, Length=143, Percent_Identity=36.3636363636364, Blast_Score=91, Evalue=4e-19,
Organism=Homo sapiens, GI226371710, Length=143, Percent_Identity=36.3636363636364, Blast_Score=91, Evalue=6e-19,
Organism=Homo sapiens, GI226371706, Length=143, Percent_Identity=36.3636363636364, Blast_Score=91, Evalue=6e-19,
Organism=Homo sapiens, GI226371716, Length=143, Percent_Identity=36.3636363636364, Blast_Score=91, Evalue=6e-19,
Organism=Homo sapiens, GI226371714, Length=143, Percent_Identity=36.3636363636364, Blast_Score=91, Evalue=6e-19,
Organism=Homo sapiens, GI226371712, Length=143, Percent_Identity=36.3636363636364, Blast_Score=91, Evalue=6e-19,
Organism=Homo sapiens, GI207450721, Length=171, Percent_Identity=34.5029239766082, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI8923143, Length=171, Percent_Identity=34.5029239766082, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI20336746, Length=166, Percent_Identity=30.1204819277108, Blast_Score=87, Evalue=6e-18,
Organism=Homo sapiens, GI93141018, Length=154, Percent_Identity=27.9220779220779, Blast_Score=74, Evalue=6e-14,
Organism=Homo sapiens, GI93141020, Length=154, Percent_Identity=27.9220779220779, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI4758496, Length=154, Percent_Identity=27.9220779220779, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI165377137, Length=166, Percent_Identity=29.5180722891566, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI8923920, Length=133, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI1787283, Length=173, Percent_Identity=53.1791907514451, Blast_Score=187, Evalue=2e-49,
Organism=Caenorhabditis elegans, GI17538214, Length=170, Percent_Identity=42.9411764705882, Blast_Score=115, Evalue=9e-27,
Organism=Drosophila melanogaster, GI24586353, Length=139, Percent_Identity=31.6546762589928, Blast_Score=70, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2748_LISMF (Q71W03)

Other databases:

- EMBL:   AE017262
- RefSeq:   YP_015336.1
- ProteinModelPortal:   Q71W03
- SMR:   Q71W03
- STRING:   Q71W03
- GeneID:   2797795
- GenomeReviews:   AE017262_GR
- KEGG:   lmf:LMOf2365_2748
- TIGR:   LMOf2365_2748
- eggNOG:   COG2110
- HOGENOM:   HBG682503
- OMA:   PRITKGR
- ProtClustDB:   PRK00431
- BioCyc:   LMON265669:LMOF2365_2748-MONOMER
- HAMAP:   MF_01205_B
- InterPro:   IPR002589
- InterPro:   IPR022942
- SMART:   SM00506

Pfam domain/function: PF01661 Macro

EC number: NA

Molecular weight: Translated: 18982; Mature: 18982

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEITVVKGDITEQDVDVIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGTCPA
CEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCC
GEAVITSAGDLQASYIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKELTSIAFPNIS
CCEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCC
TGVYGFPKKLAAEVALYTVRKWAEEEYDTSIEEIRFVCFDEENLKLYNKLINSEVV
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MEITVVKGDITEQDVDVIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGTCPA
CEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCC
GEAVITSAGDLQASYIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKELTSIAFPNIS
CCEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCC
TGVYGFPKKLAAEVALYTVRKWAEEEYDTSIEEIRFVCFDEENLKLYNKLINSEVV
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA