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The map label for this gene is yfeT [C]

Identifier: 226225318

GI number: 226225318

Start: 2819361

End: 2820098

Strand: Reverse

Name: yfeT [C]

Synonym: Lm4b_02741

Alternate gene names: 226225318

Gene position: 2820098-2819361 (Counterclockwise)

Preceding gene: 226225319

Following gene: 226225312

Centisome position: 96.82

GC content: 40.38

Gene sequence:

>738_bases
ATGTTTTCGTATGAAGTGATTAGACAATTTACAGAGACAGAGCATCATTTATACCGGTACATAATGGACAATCGGGACAA
AGTTATGTTTATGAGAGTGCGCGAGCTTTCGGAAGTGACGCACGTCTCGCCGGCTTCGATTGTTCGATTTACAAGAAAAT
TAGGCTGTGAAGGCTTTTCGGAATTTAAAGTGAAGCTAAAACAAGAAGCGACACGTGAGGTAAAGAAAAAAACAGCGGAT
ACAGTGGAAGTTTTAGAGGAATTCTTTGAACGAACAATGAACCGTGATTATGATCATGTGTTAGACGCGGCGGCGGAGAT
CATCAATGAAGCCGATTTAGTCGTGTTTTTCGGAATTGGGACTTCAGGGATTTTGGCAGAATATGGCAGTCGTTTTTTCT
CCAATATGAAGAAGCGGACTTTTTATATTAAAGATCCATTTTATCCTAACCCGGGAGAGCAATTTAAAAATAAAGCAGTG
ATGATTATTCTTTCTGTGTCAGGCGAGACGGATCAGGTGCTTGAGCAGGCGCAAAATATGCAGCAGTATGGCAGTCGGAT
TATTAGTATAACCAATACGAGCCACAATACGCTCGCGGGCTTGTCTGATGTTAATATTCCGTATTATGTAACTCAAGAAA
TGGTTGATAAGACGAATATTACGACGCAAATCCCGGTACTTTTTTTACTGGAAGCGATGGCGAAGAAAAATTATAATCAA
GAGCAAATAGACGAATAG

Upstream 100 bases:

>100_bases
TAAGATGGACACGGACAGGTGACCTAGATTGCATAATGCGAGTTGGGTCGCCTGTTTTTATTTCCCGGGAAATACTGATA
CAGATGAGGTGAATAAACTT

Downstream 100 bases:

>100_bases
AAAAGCGTGTAGGTTTCAGTGCCTACACGCTTTTTTTAGCTTATTTTTTTATATACATGCACGAACTCAGTGACAACTTC
TCTTAAAGTTTCGGTTGTGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MFSYEVIRQFTETEHHLYRYIMDNRDKVMFMRVRELSEVTHVSPASIVRFTRKLGCEGFSEFKVKLKQEATREVKKKTAD
TVEVLEEFFERTMNRDYDHVLDAAAEIINEADLVVFFGIGTSGILAEYGSRFFSNMKKRTFYIKDPFYPNPGEQFKNKAV
MIILSVSGETDQVLEQAQNMQQYGSRIISITNTSHNTLAGLSDVNIPYYVTQEMVDKTNITTQIPVLFLLEAMAKKNYNQ
EQIDE

Sequences:

>Translated_245_residues
MFSYEVIRQFTETEHHLYRYIMDNRDKVMFMRVRELSEVTHVSPASIVRFTRKLGCEGFSEFKVKLKQEATREVKKKTAD
TVEVLEEFFERTMNRDYDHVLDAAAEIINEADLVVFFGIGTSGILAEYGSRFFSNMKKRTFYIKDPFYPNPGEQFKNKAV
MIILSVSGETDQVLEQAQNMQQYGSRIISITNTSHNTLAGLSDVNIPYYVTQEMVDKTNITTQIPVLFLLEAMAKKNYNQ
EQIDE
>Mature_245_residues
MFSYEVIRQFTETEHHLYRYIMDNRDKVMFMRVRELSEVTHVSPASIVRFTRKLGCEGFSEFKVKLKQEATREVKKKTAD
TVEVLEEFFERTMNRDYDHVLDAAAEIINEADLVVFFGIGTSGILAEYGSRFFSNMKKRTFYIKDPFYPNPGEQFKNKAV
MIILSVSGETDQVLEQAQNMQQYGSRIISITNTSHNTLAGLSDVNIPYYVTQEMVDKTNITTQIPVLFLLEAMAKKNYNQ
EQIDE

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788767, Length=215, Percent_Identity=24.1860465116279, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 28442; Mature: 28442

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSYEVIRQFTETEHHLYRYIMDNRDKVMFMRVRELSEVTHVSPASIVRFTRKLGCEGFS
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHH
EFKVKLKQEATREVKKKTADTVEVLEEFFERTMNRDYDHVLDAAAEIINEADLVVFFGIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECC
TSGILAEYGSRFFSNMKKRTFYIKDPFYPNPGEQFKNKAVMIILSVSGETDQVLEQAQNM
CHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHHCCCEEEEEEEECCCHHHHHHHHHHH
QQYGSRIISITNTSHNTLAGLSDVNIPYYVTQEMVDKTNITTQIPVLFLLEAMAKKNYNQ
HHHCCEEEEEECCCCCHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH
EQIDE
HHCCC
>Mature Secondary Structure
MFSYEVIRQFTETEHHLYRYIMDNRDKVMFMRVRELSEVTHVSPASIVRFTRKLGCEGFS
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHH
EFKVKLKQEATREVKKKTADTVEVLEEFFERTMNRDYDHVLDAAAEIINEADLVVFFGIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECC
TSGILAEYGSRFFSNMKKRTFYIKDPFYPNPGEQFKNKAVMIILSVSGETDQVLEQAQNM
CHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHHCCCEEEEEEEECCCHHHHHHHHHHH
QQYGSRIISITNTSHNTLAGLSDVNIPYYVTQEMVDKTNITTQIPVLFLLEAMAKKNYNQ
HHHCCEEEEEECCCCCHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH
EQIDE
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]