Definition | Listeria monocytogenes Clip81459, complete genome. |
---|---|
Accession | NC_012488 |
Length | 2,912,690 |
Click here to switch to the map view.
The map label for this gene is phnB [C]
Identifier: 226225275
GI number: 226225275
Start: 2769100
End: 2769543
Strand: Reverse
Name: phnB [C]
Synonym: Lm4b_02698
Alternate gene names: 226225275
Gene position: 2769543-2769100 (Counterclockwise)
Preceding gene: 226225276
Following gene: 226225272
Centisome position: 95.09
GC content: 39.86
Gene sequence:
>444_bases ATGGCAAAAATGTACCCGTATTTGGCTTTTGAAAATGCAAAAGAGGCTTTAGGATATTATGAAGAAGTGTTCGGAGCAAC GAATATTTCAAGGCTTCCAGTAAGTGAGGAACAAAGCGAAATGTTTGGCTTAGCAAAAGAAAACCTAGAGAACACAACTG TTCACGGTGGCTTTACCGTCCTTGGCGCAAACTTATTTTGTTCAGATTCATTTGGCAAAGAAGTAAAACCATCCAATCAA ATTTCGATTATGCTTGATTCTAACAGTGAAGACCCAGCGGCAGTAGCCGACGCCGATGCTTTCTTTGAAAAAGTGAGCAG CTCAGAAAGAGTAACAGTAACGTTACCTTTCGAAGAGCAATTTTGGGGCGGAAAAATGGGACAATTCGTCGATGAGTACG GAATTTCTTGGATGATTCATACGCAACCTTATTCTAAATTATAA
Upstream 100 bases:
>100_bases CAAAACATGGCGCCGAATTTTTAAAAATCCCGAGATAGTTTAAGGTAAAACGAATTGGGTATTTTCTAACTAGTGTCTCA AAAACAAAGGAGCGATTTTT
Downstream 100 bases:
>100_bases AAAACAAGTGGACCAGATATTAGTTATCTTGGTCCACTTTTTTATTTGGATTCACTTTTTTCATTAAGTAATGTTCGCCG ATGCCAGGAATGACAAACGA
Product: hypothetical protein
Products: NA
Alternate protein names: 3-Demethylubiquinone-9 3-Methyltransferase; PhnB Protein
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MAKMYPYLAFENAKEALGYYEEVFGATNISRLPVSEEQSEMFGLAKENLENTTVHGGFTVLGANLFCSDSFGKEVKPSNQ ISIMLDSNSEDPAAVADADAFFEKVSSSERVTVTLPFEEQFWGGKMGQFVDEYGISWMIHTQPYSKL
Sequences:
>Translated_147_residues MAKMYPYLAFENAKEALGYYEEVFGATNISRLPVSEEQSEMFGLAKENLENTTVHGGFTVLGANLFCSDSFGKEVKPSNQ ISIMLDSNSEDPAAVADADAFFEKVSSSERVTVTLPFEEQFWGGKMGQFVDEYGISWMIHTQPYSKL >Mature_146_residues AKMYPYLAFENAKEALGYYEEVFGATNISRLPVSEEQSEMFGLAKENLENTTVHGGFTVLGANLFCSDSFGKEVKPSNQI SIMLDSNSEDPAAVADADAFFEKVSSSERVTVTLPFEEQFWGGKMGQFVDEYGISWMIHTQPYSKL
Specific function: Unknown
COG id: COG2764
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16365; Mature: 16234
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKMYPYLAFENAKEALGYYEEVFGATNISRLPVSEEQSEMFGLAKENLENTTVHGGFTV CCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCEEE LGANLFCSDSFGKEVKPSNQISIMLDSNSEDPAAVADADAFFEKVSSSERVTVTLPFEEQ EECEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHH FWGGKMGQFVDEYGISWMIHTQPYSKL HCCCCHHHHHHHHCCEEEEECCCCCCC >Mature Secondary Structure AKMYPYLAFENAKEALGYYEEVFGATNISRLPVSEEQSEMFGLAKENLENTTVHGGFTV CCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCEEE LGANLFCSDSFGKEVKPSNQISIMLDSNSEDPAAVADADAFFEKVSSSERVTVTLPFEEQ EECEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHH FWGGKMGQFVDEYGISWMIHTQPYSKL HCCCCHHHHHHHHCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA