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The map label for this gene is cydA

Identifier: 226225269

GI number: 226225269

Start: 2762960

End: 2764366

Strand: Reverse

Name: cydA

Synonym: Lm4b_02692

Alternate gene names: 226225269

Gene position: 2764366-2762960 (Counterclockwise)

Preceding gene: 226225270

Following gene: 226225268

Centisome position: 94.91

GC content: 40.8

Gene sequence:

>1407_bases
GTGGATAAACTATTTTTAGCCCGTTTTCAATTCGCATCAACAACGATTTTCCATTTCTTATTTGTACCACTTTCAATTGG
ACTTGTATTTATGGTTGCTCTTATGGAAACGTTGTATGTCGTGAAGGGGAAAGAAATTTACAAAAAAATGTCGAAGTTTT
GGGGACACATATTCCTTATTAACTTCGCAGTCGGTGTCGTAACCGGTATTATTCAAGAATTCCAGTTTGGGATGAACTGG
TCGGATTACTCTAGATTTGTTGGGGACGTATTCGGAGCACCACTTGCAATCGAAGCGTTACTTGCATTCTTTATGGAATC
TACGTTTATCGGACTTTGGATTTTTGGTTGGGACAAACTTGGCAAAAAACTTCATTTAGCATGTATTTGGCTTGTTTCAA
TCGGAACAATTATGTCTAGTTTCTGGATTTTAGCAGCGAACTCATTTATGCAACATCCGGTTGGTTTTGAATTTAAGAAC
GGACGCGCAGAAATGAATGACTTCTTGCAACTTATTACTAATGGACAACTACTTGTGGAGTTCCCGCACGTTATATTCGG
GGCATTTGCCACTGGGGCCTTTTTCATTGCTGGTGTCAGTGCGTATAAGATGCTCAAAAAACAAGATGTCGCCTTCTTTA
AACGATCATTCCAAATTGCAATGGTCATGGCGGTAATCGGTGGCTTTGGTGTGGCTTTCAGTGGTCACTCACAAGCACAA
TACTTGGTTAAAACACAACCAATGAAAATGGCAGCAACAGAGGGGATATGGGAAGATACAGCCGACCCAGCTCCGTGGAC
GATGATTGCCAAGATCAACCCAGAAGAGAAGAAAAACGAATGGGAAGTCAATGTCCCTTACGCGCTAAGTTTCTTATCTT
ACGGAACATTAACTGGTAGCGTGGAAGGTATGAACACGCTGCAAAAACAATACGAAGAAAAATATGGTGAAGGTGACTAC
ATCCCACCAGTTAAAACAGCATTTTGGAGCTTCCGTATCATGGTTGGCGCAGGTATGTTAATGATTTTATTCGCATTAAT
TGGTATCGTGCTTGCTTGGAAGAAAAAACTCGTTAATGCAAAATGGTATTTACGTTTCATGATTCCAATGATTGGCTTCC
CGTTCCTAGCGAACTCCATGGGTTGGATTATGACAGAAATAGGGCGACAACCATGGGTAGTCTTCGGTTACATGAAAACC
GCCGATGCCGTATCGCCAAACGTTTCATCAGGACAAATTTTGTTCTCGATAATTGCGTTCTCGACAATTTATACGATTTT
AGCCATTCTGTTGGTTTACTTGTTTATACGTGAAATTAAAAAAGGACCAGACGGACACAAACCAGAAAAAGCAGAGATTT
CCGTAGATCCGTTTGATAAGGGGGATGAAAGCTTTGTCACTAAATGA

Upstream 100 bases:

>100_bases
GAACGCGTCACTTTGGGCGGTTTTTCACATGATTTTTAAGAGAGAAGCACAAATCAGGGAACGAAGCAGTAATTTTTAGC
ACAAAAAGGAGGAGAAAAGG

Downstream 100 bases:

>100_bases
GTTATGGTTTCTATTAATCGCCATCTTATTCATTGGATTCTTCTTCCTTGAAGGTTTTGACTTTGGTGTTGGGATGTCTA
CACGATTTATGGCTAGAAAT

Product: cytochrome D ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MDKLFLARFQFASTTIFHFLFVPLSIGLVFMVALMETLYVVKGKEIYKKMSKFWGHIFLINFAVGVVTGIIQEFQFGMNW
SDYSRFVGDVFGAPLAIEALLAFFMESTFIGLWIFGWDKLGKKLHLACIWLVSIGTIMSSFWILAANSFMQHPVGFEFKN
GRAEMNDFLQLITNGQLLVEFPHVIFGAFATGAFFIAGVSAYKMLKKQDVAFFKRSFQIAMVMAVIGGFGVAFSGHSQAQ
YLVKTQPMKMAATEGIWEDTADPAPWTMIAKINPEEKKNEWEVNVPYALSFLSYGTLTGSVEGMNTLQKQYEEKYGEGDY
IPPVKTAFWSFRIMVGAGMLMILFALIGIVLAWKKKLVNAKWYLRFMIPMIGFPFLANSMGWIMTEIGRQPWVVFGYMKT
ADAVSPNVSSGQILFSIIAFSTIYTILAILLVYLFIREIKKGPDGHKPEKAEISVDPFDKGDESFVTK

Sequences:

>Translated_468_residues
MDKLFLARFQFASTTIFHFLFVPLSIGLVFMVALMETLYVVKGKEIYKKMSKFWGHIFLINFAVGVVTGIIQEFQFGMNW
SDYSRFVGDVFGAPLAIEALLAFFMESTFIGLWIFGWDKLGKKLHLACIWLVSIGTIMSSFWILAANSFMQHPVGFEFKN
GRAEMNDFLQLITNGQLLVEFPHVIFGAFATGAFFIAGVSAYKMLKKQDVAFFKRSFQIAMVMAVIGGFGVAFSGHSQAQ
YLVKTQPMKMAATEGIWEDTADPAPWTMIAKINPEEKKNEWEVNVPYALSFLSYGTLTGSVEGMNTLQKQYEEKYGEGDY
IPPVKTAFWSFRIMVGAGMLMILFALIGIVLAWKKKLVNAKWYLRFMIPMIGFPFLANSMGWIMTEIGRQPWVVFGYMKT
ADAVSPNVSSGQILFSIIAFSTIYTILAILLVYLFIREIKKGPDGHKPEKAEISVDPFDKGDESFVTK
>Mature_468_residues
MDKLFLARFQFASTTIFHFLFVPLSIGLVFMVALMETLYVVKGKEIYKKMSKFWGHIFLINFAVGVVTGIIQEFQFGMNW
SDYSRFVGDVFGAPLAIEALLAFFMESTFIGLWIFGWDKLGKKLHLACIWLVSIGTIMSSFWILAANSFMQHPVGFEFKN
GRAEMNDFLQLITNGQLLVEFPHVIFGAFATGAFFIAGVSAYKMLKKQDVAFFKRSFQIAMVMAVIGGFGVAFSGHSQAQ
YLVKTQPMKMAATEGIWEDTADPAPWTMIAKINPEEKKNEWEVNVPYALSFLSYGTLTGSVEGMNTLQKQYEEKYGEGDY
IPPVKTAFWSFRIMVGAGMLMILFALIGIVLAWKKKLVNAKWYLRFMIPMIGFPFLANSMGWIMTEIGRQPWVVFGYMKT
ADAVSPNVSSGQILFSIIAFSTIYTILAILLVYLFIREIKKGPDGHKPEKAEISVDPFDKGDESFVTK

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=520, Percent_Identity=36.7307692307692, Blast_Score=344, Evalue=7e-96,
Organism=Escherichia coli, GI1787212, Length=507, Percent_Identity=37.8698224852071, Blast_Score=335, Evalue=3e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 52800; Mature: 52800

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MDKLFLARFQFASTTIFHFLFVPLSIGLVFMVALMETLYVVKGKEIYKKMSKFWGHIFLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
NFAVGVVTGIIQEFQFGMNWSDYSRFVGDVFGAPLAIEALLAFFMESTFIGLWIFGWDKL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEHHHH
GKKLHLACIWLVSIGTIMSSFWILAANSFMQHPVGFEFKNGRAEMNDFLQLITNGQLLVE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHCCCEEEE
FPHVIFGAFATGAFFIAGVSAYKMLKKQDVAFFKRSFQIAMVMAVIGGFGVAFSGHSQAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCE
YLVKTQPMKMAATEGIWEDTADPAPWTMIAKINPEEKKNEWEVNVPYALSFLSYGTLTGS
EEEECCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHCCCCCC
VEGMNTLQKQYEEKYGEGDYIPPVKTAFWSFRIMVGAGMLMILFALIGIVLAWKKKLVNA
CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCH
KWYLRFMIPMIGFPFLANSMGWIMTEIGRQPWVVFGYMKTADAVSPNVSSGQILFSIIAF
HHHHHHHHHHHCHHHHHCCHHHHHHHHCCCCEEEEEEHHHHCCCCCCCCCCHHHHHHHHH
STIYTILAILLVYLFIREIKKGPDGHKPEKAEISVDPFDKGDESFVTK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]