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The map label for this gene is cydB

Identifier: 226225268

GI number: 226225268

Start: 2761960

End: 2762973

Strand: Reverse

Name: cydB

Synonym: Lm4b_02691

Alternate gene names: 226225268

Gene position: 2762973-2761960 (Counterclockwise)

Preceding gene: 226225269

Following gene: 226225267

Centisome position: 94.86

GC content: 40.53

Gene sequence:

>1014_bases
TTGTCACTAAATGAGTTATGGTTTCTATTAATCGCCATCTTATTCATTGGATTCTTCTTCCTTGAAGGTTTTGACTTTGG
TGTTGGGATGTCTACACGATTTATGGCTAGAAATGCACTTGAACGCCGCGTGCTCGTTAATACGATTGGACCGTTCTGGG
ATGCAAATGAAGTTTGGTTACTAACTGCTGGGGGCGCGATTTTCGCCGCTTTCCCTAACTGGTATGCAACCATGTTTAGT
GGTTATTATATTCCGCTAGTATTCTTATTACTTGCGCTAATTGGCCGTGGTGTTTCTTTTGAATTCCGTGGTCAAAAAGA
TTCACCGCTTTGGATAAAAACATGGGATTGGGTTATTTTCTTCGGTAGTATTTTACCGCCATTCCTATTTGGTGTATTAT
TTGCTAGCTTGATTCAAGGTATGCCGATTAATAGTGATATGGATATGTACGCTGGGTTCTTTGATTACATTACCGTATTC
TCCGTATGGGGTGGCGTGACGATTACGCTCATGTGCCTACTTCACGGATTACTATTTATTACTTTACGTACAGAAGAGGA
TATTCAAGACCGTGCTCGTCGTATGGCGAAACGTGTTTGGTTTATTACTGTACCAGCTCTAGTAATTTTCGTTGTACTTG
CTTACTTCAATACTGACATGTTCCAAGTTAGACCTGTACTTGTACCACTGATGATTGGAATTGTAGTCGTTATGTACGTG
CTATCTGCCCTGTTTATTTGGAAAGATCGTGATATTTTGGCATTTACATTCGGCGGACTTGGAATTGTCTTCACGATTGC
GACGATTTTCGTGTCACTATTCCCACGTGTAATGATCAGTTCTATCAACAGTGCGTTTGATTTAACTATAGAAAATGCAG
CTTCCGGACAATATTCGCTTAGTGTGATGACGATAGTTGCCGTTACGCTACTGCCGTTTGTTCTTGGTTACCAAATTTGG
AGCTACTATGTTTTCCGTAAGCGCGTTTCTAGTAAGGAGAAAATGACGTATTAA

Upstream 100 bases:

>100_bases
GTTTACTTGTTTATACGTGAAATTAAAAAAGGACCAGACGGACACAAACCAGAAAAAGCAGAGATTTCCGTAGATCCGTT
TGATAAGGGGGATGAAAGCT

Downstream 100 bases:

>100_bases
TGGGAAAAGATTTAAGGAACTACAAAGGAATTAAAAAAATAATGGCGATTCTCGCAGTTTTCACGCTAGTTCAAGGTGCT
GCGATTATCGTGATGGCGAT

Product: cytochrome D ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MSLNELWFLLIAILFIGFFFLEGFDFGVGMSTRFMARNALERRVLVNTIGPFWDANEVWLLTAGGAIFAAFPNWYATMFS
GYYIPLVFLLLALIGRGVSFEFRGQKDSPLWIKTWDWVIFFGSILPPFLFGVLFASLIQGMPINSDMDMYAGFFDYITVF
SVWGGVTITLMCLLHGLLFITLRTEEDIQDRARRMAKRVWFITVPALVIFVVLAYFNTDMFQVRPVLVPLMIGIVVVMYV
LSALFIWKDRDILAFTFGGLGIVFTIATIFVSLFPRVMISSINSAFDLTIENAASGQYSLSVMTIVAVTLLPFVLGYQIW
SYYVFRKRVSSKEKMTY

Sequences:

>Translated_337_residues
MSLNELWFLLIAILFIGFFFLEGFDFGVGMSTRFMARNALERRVLVNTIGPFWDANEVWLLTAGGAIFAAFPNWYATMFS
GYYIPLVFLLLALIGRGVSFEFRGQKDSPLWIKTWDWVIFFGSILPPFLFGVLFASLIQGMPINSDMDMYAGFFDYITVF
SVWGGVTITLMCLLHGLLFITLRTEEDIQDRARRMAKRVWFITVPALVIFVVLAYFNTDMFQVRPVLVPLMIGIVVVMYV
LSALFIWKDRDILAFTFGGLGIVFTIATIFVSLFPRVMISSINSAFDLTIENAASGQYSLSVMTIVAVTLLPFVLGYQIW
SYYVFRKRVSSKEKMTY
>Mature_336_residues
SLNELWFLLIAILFIGFFFLEGFDFGVGMSTRFMARNALERRVLVNTIGPFWDANEVWLLTAGGAIFAAFPNWYATMFSG
YYIPLVFLLLALIGRGVSFEFRGQKDSPLWIKTWDWVIFFGSILPPFLFGVLFASLIQGMPINSDMDMYAGFFDYITVFS
VWGGVTITLMCLLHGLLFITLRTEEDIQDRARRMAKRVWFITVPALVIFVVLAYFNTDMFQVRPVLVPLMIGIVVVMYVL
SALFIWKDRDILAFTFGGLGIVFTIATIFVSLFPRVMISSINSAFDLTIENAASGQYSLSVMTIVAVTLLPFVLGYQIWS
YYVFRKRVSSKEKMTY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=361, Percent_Identity=35.4570637119114, Blast_Score=215, Evalue=3e-57,
Organism=Escherichia coli, GI1787213, Length=369, Percent_Identity=30.3523035230352, Blast_Score=171, Evalue=7e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 38454; Mature: 38323

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNELWFLLIAILFIGFFFLEGFDFGVGMSTRFMARNALERRVLVNTIGPFWDANEVWL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
LTAGGAIFAAFPNWYATMFSGYYIPLVFLLLALIGRGVSFEFRGQKDSPLWIKTWDWVIF
EEECCEEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEHHHHHHH
FGSILPPFLFGVLFASLIQGMPINSDMDMYAGFFDYITVFSVWGGVTITLMCLLHGLLFI
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
TLRTEEDIQDRARRMAKRVWFITVPALVIFVVLAYFNTDMFQVRPVLVPLMIGIVVVMYV
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LSALFIWKDRDILAFTFGGLGIVFTIATIFVSLFPRVMISSINSAFDLTIENAASGQYSL
HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCHHH
SVMTIVAVTLLPFVLGYQIWSYYVFRKRVSSKEKMTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SLNELWFLLIAILFIGFFFLEGFDFGVGMSTRFMARNALERRVLVNTIGPFWDANEVWL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
LTAGGAIFAAFPNWYATMFSGYYIPLVFLLLALIGRGVSFEFRGQKDSPLWIKTWDWVIF
EEECCEEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEHHHHHHH
FGSILPPFLFGVLFASLIQGMPINSDMDMYAGFFDYITVFSVWGGVTITLMCLLHGLLFI
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
TLRTEEDIQDRARRMAKRVWFITVPALVIFVVLAYFNTDMFQVRPVLVPLMIGIVVVMYV
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LSALFIWKDRDILAFTFGGLGIVFTIATIFVSLFPRVMISSINSAFDLTIENAASGQYSL
HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCHHH
SVMTIVAVTLLPFVLGYQIWSYYVFRKRVSSKEKMTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]