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The map label for this gene is ybbR [H]

Identifier: 226224725

GI number: 226224725

Start: 2199024

End: 2200382

Strand: Reverse

Name: ybbR [H]

Synonym: Lm4b_02141

Alternate gene names: 226224725

Gene position: 2200382-2199024 (Counterclockwise)

Preceding gene: 226224726

Following gene: 226224724

Centisome position: 75.54

GC content: 37.97

Gene sequence:

>1359_bases
ATGGATCGAATTTTAAATAACAAATGGTCGATTCGGATTGTAGCCTTACTACTCGCAGCCATCCTTTTTACATCAGTTAA
TGCAAATAATAATAACGCCACGACTTTTTCAACGACTTCTTCTAGTGATTCAGAAGTCATCGAGAATGTCCCAGTCAAAG
TATATTATGATAAAACGAATTTATATATTTCGGGTATTCCAGAAACTGTTACAGTCACGCTTTCAGGCCCTCGTAGCATC
GTTCAGTCTGCCAAAGCTCAACAAGACTTTACCGTTTATGCAGATTTGAAAAATGCTTCCATTGGGACCCAAGAAGTAAA
ACTACAAGTGAAAGATGTATCTGACCGCCTAAAAGTAAAAGTGAATCCAGCAACAGTCAACGTCAATGTACAAGAAAAAG
TAACGAAAAAATTCTCTGTTGACGTAGAATTGAGCAAATCTGTCGTTGCAGATGGTTATCAAGCTGGAACGCCCATCATT
GATCCTAAAAAAGTCTCTATTACTGGTGCAAAAGATACTATCGAACAAATTGCTTATGTAAAAGCAACACTCGAAAGTGA
TGGCAAACATAAATCCGAATTTACCGATAAGGCTACCGTCTCTGTTTTTGATAGCAATTTGAACAAGCTAGATGTCGAAG
TAAATCCGCAAGAAGTGGAAGTGACCGTGCCAGTTGAAAAAGTCGGCAAGTCAGTTCCAGTGAAAATTAAGCAAGAAGGC
ACGCCAGAAAGTGATATTGAAATTTCCAGCATGACACCAGATAAGTCAGAAGTAGTTGTAGTTGGTGACGATGCGGTCCT
TGAAAAAATCAAAGAAATTGAAATTCCAATTGATGTTTCTAAAATCAAAGCAGATACCGTCAAAGAAGTGACTGTCCCGG
TTCCAACTGGAGCCAAATCAGTCCAACCGACGACGATAGAGGTGAAGATTAAGACCGTAAAAAAGTCTGAAGCAAATAAC
AATCAAACAACTTCAGATAGTAATAACCAAGACACAGATACAACGGATAAAAACACCGATGATTCAGGAGATAACGATAC
AAAAATTTCTAAGTCATTTTCTAATATGCAAGTCTACATGAGTGGATTGAAAAATACTTTCGATGCACAAATGATAACTC
CTGCCAATGGAAAAGTATCTGTGACGATAACTGGAGAGAAGAAAACAGTAGACGGAATAGCGGCGAAAGACTTGAGTGTG
ATTGCCAATTTGAGTAAAAGCAAAGCAGGAAGTTACAGTATTCCACTAGAATTGAATGGCTTACCGGATAATGTTGCCTA
TGTTATTAATCCTAGACAAGCTGATTTCATTATTACGGATAAAGAGGCATCTATTGAAGTACCTTCCAAAAGCACATAA

Upstream 100 bases:

>100_bases
CAGAAGAAGAGTTACATAAAATTCTTCTTAAAGAACTAGTCACAGTAACTGCAAAGAAACCTTCTATCTTTTCTAAATGG
AAAGGAGGCAAAAGCGAATG

Downstream 100 bases:

>100_bases
CATAAGGAGTGTGGGGCGCTAGTCTCATACTCCTCCTTTTTGGCAAAGAACTTTTTATACATAGAATAGTGGAAAAGCAA
GCAATACCAACGTTTTATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MDRILNNKWSIRIVALLLAAILFTSVNANNNNATTFSTTSSSDSEVIENVPVKVYYDKTNLYISGIPETVTVTLSGPRSI
VQSAKAQQDFTVYADLKNASIGTQEVKLQVKDVSDRLKVKVNPATVNVNVQEKVTKKFSVDVELSKSVVADGYQAGTPII
DPKKVSITGAKDTIEQIAYVKATLESDGKHKSEFTDKATVSVFDSNLNKLDVEVNPQEVEVTVPVEKVGKSVPVKIKQEG
TPESDIEISSMTPDKSEVVVVGDDAVLEKIKEIEIPIDVSKIKADTVKEVTVPVPTGAKSVQPTTIEVKIKTVKKSEANN
NQTTSDSNNQDTDTTDKNTDDSGDNDTKISKSFSNMQVYMSGLKNTFDAQMITPANGKVSVTITGEKKTVDGIAAKDLSV
IANLSKSKAGSYSIPLELNGLPDNVAYVINPRQADFIITDKEASIEVPSKST

Sequences:

>Translated_452_residues
MDRILNNKWSIRIVALLLAAILFTSVNANNNNATTFSTTSSSDSEVIENVPVKVYYDKTNLYISGIPETVTVTLSGPRSI
VQSAKAQQDFTVYADLKNASIGTQEVKLQVKDVSDRLKVKVNPATVNVNVQEKVTKKFSVDVELSKSVVADGYQAGTPII
DPKKVSITGAKDTIEQIAYVKATLESDGKHKSEFTDKATVSVFDSNLNKLDVEVNPQEVEVTVPVEKVGKSVPVKIKQEG
TPESDIEISSMTPDKSEVVVVGDDAVLEKIKEIEIPIDVSKIKADTVKEVTVPVPTGAKSVQPTTIEVKIKTVKKSEANN
NQTTSDSNNQDTDTTDKNTDDSGDNDTKISKSFSNMQVYMSGLKNTFDAQMITPANGKVSVTITGEKKTVDGIAAKDLSV
IANLSKSKAGSYSIPLELNGLPDNVAYVINPRQADFIITDKEASIEVPSKST
>Mature_452_residues
MDRILNNKWSIRIVALLLAAILFTSVNANNNNATTFSTTSSSDSEVIENVPVKVYYDKTNLYISGIPETVTVTLSGPRSI
VQSAKAQQDFTVYADLKNASIGTQEVKLQVKDVSDRLKVKVNPATVNVNVQEKVTKKFSVDVELSKSVVADGYQAGTPII
DPKKVSITGAKDTIEQIAYVKATLESDGKHKSEFTDKATVSVFDSNLNKLDVEVNPQEVEVTVPVEKVGKSVPVKIKQEG
TPESDIEISSMTPDKSEVVVVGDDAVLEKIKEIEIPIDVSKIKADTVKEVTVPVPTGAKSVQPTTIEVKIKTVKKSEANN
NQTTSDSNNQDTDTTDKNTDDSGDNDTKISKSFSNMQVYMSGLKNTFDAQMITPANGKVSVTITGEKKTVDGIAAKDLSV
IANLSKSKAGSYSIPLELNGLPDNVAYVINPRQADFIITDKEASIEVPSKST

Specific function: Unknown

COG id: COG4856

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 YbbR-like domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012505 [H]

Pfam domain/function: PF07949 YbbR [H]

EC number: NA

Molecular weight: Translated: 48781; Mature: 48781

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRILNNKWSIRIVALLLAAILFTSVNANNNNATTFSTTSSSDSEVIENVPVKVYYDKTN
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHCCCEEEEEECCE
LYISGIPETVTVTLSGPRSIVQSAKAQQDFTVYADLKNASIGTQEVKLQVKDVSDRLKVK
EEEECCCCEEEEEECCCHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEEECCCEEEEE
VNPATVNVNVQEKVTKKFSVDVELSKSVVADGYQAGTPIIDPKKVSITGAKDTIEQIAYV
EECEEEEEEHHHHHHHHEEEEEEECCHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHH
KATLESDGKHKSEFTDKATVSVFDSNLNKLDVEVNPQEVEVTVPVEKVGKSVPVKIKQEG
EEECCCCCCCCHHCCCCEEEEEEECCCCEEEEEECCCEEEEEECHHHCCCCCCEEEECCC
TPESDIEISSMTPDKSEVVVVGDDAVLEKIKEIEIPIDVSKIKADTVKEVTVPVPTGAKS
CCCCCEEEEECCCCCCCEEEECCHHHHHHHHHCCCCEEHHHHCCCCEEEEEEECCCCCCC
VQPTTIEVKIKTVKKSEANNNQTTSDSNNQDTDTTDKNTDDSGDNDTKISKSFSNMQVYM
CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
SGLKNTFDAQMITPANGKVSVTITGEKKTVDGIAAKDLSVIANLSKSKAGSYSIPLELNG
HHHCCCCCCEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECC
LPDNVAYVINPRQADFIITDKEASIEVPSKST
CCCCCEEEECCCCCEEEEECCCCEEECCCCCC
>Mature Secondary Structure
MDRILNNKWSIRIVALLLAAILFTSVNANNNNATTFSTTSSSDSEVIENVPVKVYYDKTN
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHCCCEEEEEECCE
LYISGIPETVTVTLSGPRSIVQSAKAQQDFTVYADLKNASIGTQEVKLQVKDVSDRLKVK
EEEECCCCEEEEEECCCHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEEECCCEEEEE
VNPATVNVNVQEKVTKKFSVDVELSKSVVADGYQAGTPIIDPKKVSITGAKDTIEQIAYV
EECEEEEEEHHHHHHHHEEEEEEECCHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHH
KATLESDGKHKSEFTDKATVSVFDSNLNKLDVEVNPQEVEVTVPVEKVGKSVPVKIKQEG
EEECCCCCCCCHHCCCCEEEEEEECCCCEEEEEECCCEEEEEECHHHCCCCCCEEEECCC
TPESDIEISSMTPDKSEVVVVGDDAVLEKIKEIEIPIDVSKIKADTVKEVTVPVPTGAKS
CCCCCEEEEECCCCCCCEEEECCHHHHHHHHHCCCCEEHHHHCCCCEEEEEEECCCCCCC
VQPTTIEVKIKTVKKSEANNNQTTSDSNNQDTDTTDKNTDDSGDNDTKISKSFSNMQVYM
CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
SGLKNTFDAQMITPANGKVSVTITGEKKTVDGIAAKDLSVIANLSKSKAGSYSIPLELNG
HHHCCCCCCEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECC
LPDNVAYVINPRQADFIITDKEASIEVPSKST
CCCCCEEEECCCCCEEEEECCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]