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The map label for this gene is ydiB [H]

Identifier: 226224684

GI number: 226224684

Start: 2157011

End: 2157472

Strand: Reverse

Name: ydiB [H]

Synonym: Lm4b_02099

Alternate gene names: 226224684

Gene position: 2157472-2157011 (Counterclockwise)

Preceding gene: 226224685

Following gene: 226224683

Centisome position: 74.07

GC content: 41.99

Gene sequence:

>462_bases
ATGGAATTCGAATTGATAATGACAAGTGAAAGAGAGACAAGGCTTCGCGCAAAACAACTTGGTGAACAATTGACAGCTGG
AGATGTGATTTTGCTTGAAGGTGATCTCGGCGCGGGTAAAACTACTTTTACCAAAGGTCTCGGTGAAGGTCTTTTGATTC
CGCAAATGATTAAAAGTCCGACATTTACAATCATTCGTGAATATAAGAAAGGACGCTTGCCACTTTATCATATGGACGTG
TACCGTTTGGAAGATGCTTCGGCTGATGAACTTGGTTTGGAGGAGTATTTCTACGGAGCAGGTGTAAGCGTGGTTGAGTG
GGCGCAGTTTGTTCGCGAAGATTTGCCAGAAGAATACTTGGAAATTCAGCTTTTTCATATAGATGAGAATACGCGTAAAT
TGGTTGTGAAGCCAGTTGGAGAAAGATATGAGCAACTTGCAATGGAGGTTTTTGGGAAATGA

Upstream 100 bases:

>100_bases
TCGAAAGACGCAGCGACTTAGGTCGTTGCGTTTTTTTGATTTTTATTTTGGCGCGGCTTTGTGGTATGATATGTAGAGAA
AATGATGGACGGGTGAGGTA

Downstream 100 bases:

>100_bases
TACTTGGGATGGATACGTCTTCCGATACGATGGCGATAGCGCTTTTTAATGAAGGTGTCGTTATCGGCGAATATACAACG
AATTTGAAAAAAAATCATAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MEFELIMTSERETRLRAKQLGEQLTAGDVILLEGDLGAGKTTFTKGLGEGLLIPQMIKSPTFTIIREYKKGRLPLYHMDV
YRLEDASADELGLEEYFYGAGVSVVEWAQFVREDLPEEYLEIQLFHIDENTRKLVVKPVGERYEQLAMEVFGK

Sequences:

>Translated_153_residues
MEFELIMTSERETRLRAKQLGEQLTAGDVILLEGDLGAGKTTFTKGLGEGLLIPQMIKSPTFTIIREYKKGRLPLYHMDV
YRLEDASADELGLEEYFYGAGVSVVEWAQFVREDLPEEYLEIQLFHIDENTRKLVVKPVGERYEQLAMEVFGK
>Mature_153_residues
MEFELIMTSERETRLRAKQLGEQLTAGDVILLEGDLGAGKTTFTKGLGEGLLIPQMIKSPTFTIIREYKKGRLPLYHMDV
YRLEDASADELGLEEYFYGAGVSVVEWAQFVREDLPEEYLEIQLFHIDENTRKLVVKPVGERYEQLAMEVFGK

Specific function: Displays ATPase activity, which is modulated by the oligomeric status of the protein. The physiological partner is unknown [H]

COG id: COG0802

COG function: function code R; Predicted ATPase or kinase

Gene ontology:

Cell location: Cytoplasm. Note=Localized predominantly at the cell poles and at the periphery of the bacterium [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0079 family [H]

Homologues:

Organism=Escherichia coli, GI1790610, Length=129, Percent_Identity=36.4341085271318, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003442 [H]

Pfam domain/function: PF02367 UPF0079 [H]

EC number: NA

Molecular weight: Translated: 17537; Mature: 17537

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFELIMTSERETRLRAKQLGEQLTAGDVILLEGDLGAGKTTFTKGLGEGLLIPQMIKSP
CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCCCCHHHHCCC
TFTIIREYKKGRLPLYHMDVYRLEDASADELGLEEYFYGAGVSVVEWAQFVREDLPEEYL
HHHHHHHHHCCCCCEEECCEEEECCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCHHHH
EIQLFHIDENTRKLVVKPVGERYEQLAMEVFGK
EEEEEEECCCCEEEEEECHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEFELIMTSERETRLRAKQLGEQLTAGDVILLEGDLGAGKTTFTKGLGEGLLIPQMIKSP
CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCCCCHHHHCCC
TFTIIREYKKGRLPLYHMDVYRLEDASADELGLEEYFYGAGVSVVEWAQFVREDLPEEYL
HHHHHHHHHCCCCCEEECCEEEECCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCHHHH
EIQLFHIDENTRKLVVKPVGERYEQLAMEVFGK
EEEEEEECCCCEEEEEECHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]