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The map label for this gene is ydiC [H]

Identifier: 226224683

GI number: 226224683

Start: 2156322

End: 2157014

Strand: Reverse

Name: ydiC [H]

Synonym: Lm4b_02098

Alternate gene names: 226224683

Gene position: 2157014-2156322 (Counterclockwise)

Preceding gene: 226224684

Following gene: 226224682

Centisome position: 74.06

GC content: 44.73

Gene sequence:

>693_bases
ATGATACTTGGGATGGATACGTCTTCCGATACGATGGCGATAGCGCTTTTTAATGAAGGTGTCGTTATCGGCGAATATAC
AACGAATTTGAAAAAAAATCATAGTGTGCGGTTGCTTCCAGCGATTGCTGTTTTGATGGAAGAATGTGGAGTAAAACCTA
CTGACTTAGAAAAGATTGCTGTAGCAAAAGGTCCAGGGTCTTATACCGGGCTTCGTATTGGTGTAACAGTTGCGAAAACA
ATGGCTTGGGATGCAGGGATTCCGATTGTCGGGATTTCCTCTTTGGCACTTTTAGCAGAGAATGGTTTGTACTTTCCTGG
AAAAGTGGTCGCGTTGATGGATGCGCGCCGTAGTAATGTATATGCGGGCGTTTATCAAGCAAGCGAAGGTGAAATGCAGA
GTGTTATCGCGGACGGACATATTGCGTTAACTGAATTACTAGAACAATTCCTGTCTAGCGAGGAGCCCATTTTATTTGTC
GGAACTTTAACAGAACAAATTTGTGTGACTGTGACGGAAGTCCTCGGTGAGCGGGCGGTTTTTGCGCAGGCAGATTATAC
TTACTCACGAGCTAGTTCTCTTGTAAAACTGGCAGAGAATTTAGACGGAGAACCGGCAGACAACTTTGTTCCTGATTATT
TAAAACTGGCAGAAGCGGAGAGCAAATGGTTGGAATCGAGGGGTTCCGAGTGA

Upstream 100 bases:

>100_bases
TGGAAATTCAGCTTTTTCATATAGATGAGAATACGCGTAAATTGGTTGTGAAGCCAGTTGGAGAAAGATATGAGCAACTT
GCAATGGAGGTTTTTGGGAA

Downstream 100 bases:

>100_bases
GTTTGGATGAAGCCTTATTATTTCGGGAAGCAACCGTGACTGACTTGAAAAGTATTATGAATGTCGAAAATGCAGCATTC
ACGGTACCTTGGACGGAAGC

Product: glycoprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MILGMDTSSDTMAIALFNEGVVIGEYTTNLKKNHSVRLLPAIAVLMEECGVKPTDLEKIAVAKGPGSYTGLRIGVTVAKT
MAWDAGIPIVGISSLALLAENGLYFPGKVVALMDARRSNVYAGVYQASEGEMQSVIADGHIALTELLEQFLSSEEPILFV
GTLTEQICVTVTEVLGERAVFAQADYTYSRASSLVKLAENLDGEPADNFVPDYLKLAEAESKWLESRGSE

Sequences:

>Translated_230_residues
MILGMDTSSDTMAIALFNEGVVIGEYTTNLKKNHSVRLLPAIAVLMEECGVKPTDLEKIAVAKGPGSYTGLRIGVTVAKT
MAWDAGIPIVGISSLALLAENGLYFPGKVVALMDARRSNVYAGVYQASEGEMQSVIADGHIALTELLEQFLSSEEPILFV
GTLTEQICVTVTEVLGERAVFAQADYTYSRASSLVKLAENLDGEPADNFVPDYLKLAEAESKWLESRGSE
>Mature_230_residues
MILGMDTSSDTMAIALFNEGVVIGEYTTNLKKNHSVRLLPAIAVLMEECGVKPTDLEKIAVAKGPGSYTGLRIGVTVAKT
MAWDAGIPIVGISSLALLAENGLYFPGKVVALMDARRSNVYAGVYQASEGEMQSVIADGHIALTELLEQFLSSEEPILFV
GTLTEQICVTVTEVLGERAVFAQADYTYSRASSLVKLAENLDGEPADNFVPDYLKLAEAESKWLESRGSE

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=130, Percent_Identity=34.6153846153846, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 24684; Mature: 24684

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILGMDTSSDTMAIALFNEGVVIGEYTTNLKKNHSVRLLPAIAVLMEECGVKPTDLEKIA
CEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHCCCCCCCHHEE
VAKGPGSYTGLRIGVTVAKTMAWDAGIPIVGISSLALLAENGLYFPGKVVALMDARRSNV
EECCCCCCCEEEEHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCCCEEEEEHHHCCCE
YAGVYQASEGEMQSVIADGHIALTELLEQFLSSEEPILFVGTLTEQICVTVTEVLGERAV
EEEEEECCCCHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCE
FAQADYTYSRASSLVKLAENLDGEPADNFVPDYLKLAEAESKWLESRGSE
EEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MILGMDTSSDTMAIALFNEGVVIGEYTTNLKKNHSVRLLPAIAVLMEECGVKPTDLEKIA
CEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHCCCCCCCHHEE
VAKGPGSYTGLRIGVTVAKTMAWDAGIPIVGISSLALLAENGLYFPGKVVALMDARRSNV
EECCCCCCCEEEEHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCCCEEEEEHHHCCCE
YAGVYQASEGEMQSVIADGHIALTELLEQFLSSEEPILFVGTLTEQICVTVTEVLGERAV
EEEEEECCCCHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCE
FAQADYTYSRASSLVKLAENLDGEPADNFVPDYLKLAEAESKWLESRGSE
EEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]