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The map label for this gene is cspB

Identifier: 226224613

GI number: 226224613

Start: 2083613

End: 2083813

Strand: Reverse

Name: cspB

Synonym: Lm4b_02028

Alternate gene names: 226224613

Gene position: 2083813-2083613 (Counterclockwise)

Preceding gene: 226224614

Following gene: 226224611

Centisome position: 71.54

GC content: 40.3

Gene sequence:

>201_bases
ATGCAAACAGGTACAGTTAAATGGTTTAACAGTGAAAAAGGCTTCGGTTTCATCGAAGTAGAAGGCGGAGATGATGTATT
CGTACACTTCAGCGCTATCGAAGGTGAAGGATTCAAAACTTTAGACGAAGGTCAAAGCGTTGAATTTGAAATCGTTGAAG
GCCAACGTGGCCCACAAGCAGAAAAAGTTACTAAACTTTAA

Upstream 100 bases:

>100_bases
TATGTGAATTTTGTAATTGAAAAAATGATTAGCTTGTTGTTAACATCTTTTTCGTTAGTAAAAGAAACATATTAAGAAAA
TTTTTGGAGGTTTGTGAAAT

Downstream 100 bases:

>100_bases
TCTGTTCACGTTAAACTAATAAAAACACGCAGCGGACTTCTTAGGGAGAAGCCTTGCTGCGTGTTTTTTTATGCTAAATG
AATTCGGTATGTTTTTATTT

Product: major cold-shock protein

Products: NA

Alternate protein names: CspB

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MQTGTVKWFNSEKGFGFIEVEGGDDVFVHFSAIEGEGFKTLDEGQSVEFEIVEGQRGPQAEKVTKL

Sequences:

>Translated_66_residues
MQTGTVKWFNSEKGFGFIEVEGGDDVFVHFSAIEGEGFKTLDEGQSVEFEIVEGQRGPQAEKVTKL
>Mature_66_residues
MQTGTVKWFNSEKGFGFIEVEGGDDVFVHFSAIEGEGFKTLDEGQSVEFEIVEGQRGPQAEKVTKL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=67.1875, Blast_Score=85, Evalue=7e-19,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=60.6060606060606, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=65.625, Blast_Score=82, Evalue=8e-18,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=60, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=58.7301587301587, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=60.6060606060606, Blast_Score=75, Evalue=7e-16,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=49.2537313432836, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): CSPB_LISIN (P0A358)

Other databases:

- EMBL:   AL596171
- PIR:   AB1698
- RefSeq:   NP_471458.1
- ProteinModelPortal:   P0A358
- SMR:   P0A358
- GeneID:   1130851
- GenomeReviews:   AL592022_GR
- KEGG:   lin:lin2124
- GenoList:   LIN2124
- HOGENOM:   HBG717773
- OMA:   MATRETG
- ProtClustDB:   CLSK809394
- BioCyc:   LINN272626:LIN2124-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7298; Mature: 7298

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTGTVKWFNSEKGFGFIEVEGGDDVFVHFSAIEGEGFKTLDEGQSVEFEIVEGQRGPQA
CCCCEEEEEECCCCCEEEEEECCCEEEEEEEEECCCCCEECCCCCCEEEEEEECCCCCCC
EKVTKL
CCCCCC
>Mature Secondary Structure
MQTGTVKWFNSEKGFGFIEVEGGDDVFVHFSAIEGEGFKTLDEGQSVEFEIVEGQRGPQA
CCCCEEEEEECCCCCEEEEEECCCEEEEEEEEECCCCCEECCCCCCEEEEEEECCCCCCC
EKVTKL
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669