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The map label for this gene is rpe [H]

Identifier: 226224421

GI number: 226224421

Start: 1878200

End: 1878856

Strand: Reverse

Name: rpe [H]

Synonym: Lm4b_01834

Alternate gene names: 226224421

Gene position: 1878856-1878200 (Counterclockwise)

Preceding gene: 226224422

Following gene: 226224420

Centisome position: 64.51

GC content: 38.51

Gene sequence:

>657_bases
ATGGGAAAAATAGCTCCTTCGATTTTAAGTGCAGACTTTGCAAATCTTGCAAGAGATATTAAAGAAGTAGAAAATTGCGG
TGCAGACTACATTCATATTGACGTTATGGACGGACATTTCGTTCCAAATATTACATTTGGTCCTGCTGTTGTTCAAGCCA
TTCGCCCAGAAACAAAACTACCACTTGATGTTCATTTAATGATTGAAAACCCGGATACATACATTCCAGAATTTGCAAAA
GCGGGAGCAGACTACATTACGGTGCATGTCGAAGCTTGTACGCATCTTCATCGCACATTACAATTAATCCGTTCTTACGG
TGTGAAAGCTGGCGCAGTGCTTAATCCAGCCACACCAATCGATGTTTTACAACACGTTTTAAATGAACTGGATATGGTTC
TATTTATGACAGTAAATCCTGGTTTTGGCGGACAAAAATTCATTCCAGAAGTACTAGAAAAAATTAGTGCTTTCAAGAAA
ATAGTGGATGAAAAAGGCTTAGATATCGAAATTGAAGTAGATGGCGGCGTGGATCATGAAACAGCAAAATTATGCCGTGA
TGCTGGCGCAAATGTCTTTGTAGCTGGTAGTTACATTTATGGAAATAAAAATCGTCAAACACCAATTGATAAATTACGTG
CCATTGTAGGCGAGTAA

Upstream 100 bases:

>100_bases
TAAAAACAGCTGTTGAAGCAAATGAAATAGCAGAATTTCGCTACAAACACTATATCCAAATTTTACAAGAATTAAAAAAC
AGAAAGCCGAGGTATTAAGA

Downstream 100 bases:

>100_bases
ACTAATAGTAGGGCTGGGACCTCTGTTCCAGTCTTATTTGTTAGGGAAGAAGGGGACTCAAGTATGAAAATAATTAATAT
CATGGTTGGTGGACCTGCGT

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MGKIAPSILSADFANLARDIKEVENCGADYIHIDVMDGHFVPNITFGPAVVQAIRPETKLPLDVHLMIENPDTYIPEFAK
AGADYITVHVEACTHLHRTLQLIRSYGVKAGAVLNPATPIDVLQHVLNELDMVLFMTVNPGFGGQKFIPEVLEKISAFKK
IVDEKGLDIEIEVDGGVDHETAKLCRDAGANVFVAGSYIYGNKNRQTPIDKLRAIVGE

Sequences:

>Translated_218_residues
MGKIAPSILSADFANLARDIKEVENCGADYIHIDVMDGHFVPNITFGPAVVQAIRPETKLPLDVHLMIENPDTYIPEFAK
AGADYITVHVEACTHLHRTLQLIRSYGVKAGAVLNPATPIDVLQHVLNELDMVLFMTVNPGFGGQKFIPEVLEKISAFKK
IVDEKGLDIEIEVDGGVDHETAKLCRDAGANVFVAGSYIYGNKNRQTPIDKLRAIVGE
>Mature_217_residues
GKIAPSILSADFANLARDIKEVENCGADYIHIDVMDGHFVPNITFGPAVVQAIRPETKLPLDVHLMIENPDTYIPEFAKA
GADYITVHVEACTHLHRTLQLIRSYGVKAGAVLNPATPIDVLQHVLNELDMVLFMTVNPGFGGQKFIPEVLEKISAFKKI
VDEKGLDIEIEVDGGVDHETAKLCRDAGANVFVAGSYIYGNKNRQTPIDKLRAIVGE

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=218, Percent_Identity=40.8256880733945, Blast_Score=174, Evalue=6e-44,
Organism=Homo sapiens, GI219879828, Length=218, Percent_Identity=39.9082568807339, Blast_Score=166, Evalue=1e-41,
Organism=Homo sapiens, GI24307923, Length=173, Percent_Identity=32.3699421965318, Blast_Score=101, Evalue=6e-22,
Organism=Escherichia coli, GI1789788, Length=212, Percent_Identity=50.4716981132076, Blast_Score=218, Evalue=2e-58,
Organism=Escherichia coli, GI1790523, Length=196, Percent_Identity=41.8367346938776, Blast_Score=173, Evalue=6e-45,
Organism=Escherichia coli, GI1790754, Length=172, Percent_Identity=36.6279069767442, Blast_Score=120, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI17552948, Length=219, Percent_Identity=40.6392694063927, Blast_Score=163, Evalue=6e-41,
Organism=Saccharomyces cerevisiae, GI6322341, Length=210, Percent_Identity=44.2857142857143, Blast_Score=179, Evalue=3e-46,
Organism=Drosophila melanogaster, GI24586301, Length=216, Percent_Identity=40.2777777777778, Blast_Score=171, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23847; Mature: 23716

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKIAPSILSADFANLARDIKEVENCGADYIHIDVMDGHFVPNITFGPAVVQAIRPETKL
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCCC
PLDVHLMIENPDTYIPEFAKAGADYITVHVEACTHLHRTLQLIRSYGVKAGAVLNPATPI
CEEEEEEEECCCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEECCCCHH
DVLQHVLNELDMVLFMTVNPGFGGQKFIPEVLEKISAFKKIVDEKGLDIEIEVDGGVDHE
HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
TAKLCRDAGANVFVAGSYIYGNKNRQTPIDKLRAIVGE
HHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
GKIAPSILSADFANLARDIKEVENCGADYIHIDVMDGHFVPNITFGPAVVQAIRPETKL
CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCCC
PLDVHLMIENPDTYIPEFAKAGADYITVHVEACTHLHRTLQLIRSYGVKAGAVLNPATPI
CEEEEEEEECCCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEECCCCHH
DVLQHVLNELDMVLFMTVNPGFGGQKFIPEVLEKISAFKKIVDEKGLDIEIEVDGGVDHE
HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
TAKLCRDAGANVFVAGSYIYGNKNRQTPIDKLRAIVGE
HHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]