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The map label for this gene is rsgA1

Identifier: 226224422

GI number: 226224422

Start: 1878859

End: 1879734

Strand: Reverse

Name: rsgA1

Synonym: Lm4b_01835

Alternate gene names: 226224422

Gene position: 1879734-1878859 (Counterclockwise)

Preceding gene: 226224423

Following gene: 226224421

Centisome position: 64.54

GC content: 38.81

Gene sequence:

>876_bases
GTGCTGGAAGGACAAATTATCAAAGCGTTGAGCGGATTTTACTATGTATTTTCGGAAGGAAAAGTATATCAATGTCGAGC
AAGAGGGAATTTTAGAAAACGAAATATTTCTCCACTTGTAGGCGATGATGTAGAATTTCAAATAGAAAATAAAACAGATG
GTTACATTTTAGATGTAATGTCCCGGGAGAATGCCCTTGTGCGGCCTCCCGTGGCAAACATTGATATTGCAATTTTGGTG
TTTTCGGCAGTAGAGCCGGATTTTTCCACGAATCTTGCGGATCGTTTTTTAGTAGCTATTGAGAAGGAAGATATCAAGCC
AGTTATTTGCATTAGTAAAATGGACTTGGCATCAGAATCTGAAAAAGAACAGATTGCTGTTTACAAAGACATTTACGAAG
CGATTGGTTATGATGTTTTTGTTACCAATGATGAACCGGATAAAGAAGCCATTAAAGACTATATTAGTGGGAAAACTGCA
GTTATCGCTGGGCAATCTGGTGTAGGAAAGTCGACTCTCCTAAATAGCTTAAATAGTGATTTAACTTTAAAAACAGCAGA
AATTTCGAACGCACTCGGTCGCGGAAAACATACAACGAGACACGTCGAACTAATGCCGATTGGCGATGGATTTGTCGCTG
ATACGCCTGGCTTTAGTTCAATCGAATGGGATGACTTGCAACCTGAAACATTACAATTTTGTTTTCCGGAAATGGAAGAT
CGTCGTAGTGGCTGTAAATTCCGAGGTTGCATGCATGACAATGAGCCGAATTGCGCTGTAAAAACAGCTGTTGAAGCAAA
TGAAATAGCAGAATTTCGCTACAAACACTATATCCAAATTTTACAAGAATTAAAAAACAGAAAGCCGAGGTATTAA

Upstream 100 bases:

>100_bases
TGAAGAAGGTTCTAGCGCAGGCTACAAAATTATCAGTGATGATAAAGTAATCGATGAAGGTACAGTCCCTTATCCAAATT
AAAAATAGAACGGAGGAAAT

Downstream 100 bases:

>100_bases
GAATGGGAAAAATAGCTCCTTCGATTTTAAGTGCAGACTTTGCAAATCTTGCAAGAGATATTAAAGAAGTAGAAAATTGC
GGTGCAGACTACATTCATAT

Product: ribosome-associated GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MLEGQIIKALSGFYYVFSEGKVYQCRARGNFRKRNISPLVGDDVEFQIENKTDGYILDVMSRENALVRPPVANIDIAILV
FSAVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVTNDEPDKEAIKDYISGKTA
VIAGQSGVGKSTLLNSLNSDLTLKTAEISNALGRGKHTTRHVELMPIGDGFVADTPGFSSIEWDDLQPETLQFCFPEMED
RRSGCKFRGCMHDNEPNCAVKTAVEANEIAEFRYKHYIQILQELKNRKPRY

Sequences:

>Translated_291_residues
MLEGQIIKALSGFYYVFSEGKVYQCRARGNFRKRNISPLVGDDVEFQIENKTDGYILDVMSRENALVRPPVANIDIAILV
FSAVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVTNDEPDKEAIKDYISGKTA
VIAGQSGVGKSTLLNSLNSDLTLKTAEISNALGRGKHTTRHVELMPIGDGFVADTPGFSSIEWDDLQPETLQFCFPEMED
RRSGCKFRGCMHDNEPNCAVKTAVEANEIAEFRYKHYIQILQELKNRKPRY
>Mature_291_residues
MLEGQIIKALSGFYYVFSEGKVYQCRARGNFRKRNISPLVGDDVEFQIENKTDGYILDVMSRENALVRPPVANIDIAILV
FSAVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVTNDEPDKEAIKDYISGKTA
VIAGQSGVGKSTLLNSLNSDLTLKTAEISNALGRGKHTTRHVELMPIGDGFVADTPGFSSIEWDDLQPETLQFCFPEMED
RRSGCKFRGCMHDNEPNCAVKTAVEANEIAEFRYKHYIQILQELKNRKPRY

Specific function: May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover

COG id: COG1162

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 engC GTPase domain

Homologues:

Organism=Escherichia coli, GI87082381, Length=292, Percent_Identity=34.9315068493151, Blast_Score=153, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RSGA1_LISMF (Q71YJ7)

Other databases:

- EMBL:   AE017262
- RefSeq:   YP_014440.1
- ProteinModelPortal:   Q71YJ7
- SMR:   Q71YJ7
- STRING:   Q71YJ7
- GeneID:   2799852
- GenomeReviews:   AE017262_GR
- KEGG:   lmf:LMOf2365_1847
- TIGR:   LMOf2365_1847
- eggNOG:   COG1162
- HOGENOM:   HBG652450
- OMA:   FRDCKHL
- ProtClustDB:   PRK00098
- BioCyc:   LMON265669:LMOF2365_1847-MONOMER
- HAMAP:   MF_01820
- InterPro:   IPR010914
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004881
- Gene3D:   G3DSA:2.40.50.140
- TIGRFAMs:   TIGR00157

Pfam domain/function: PF03193 DUF258; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 32744; Mature: 32744

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS50936 ENGC_GTPASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEGQIIKALSGFYYVFSEGKVYQCRARGNFRKRNISPLVGDDVEFQIENKTDGYILDVM
CCCCHHHHHHCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEE
SRENALVRPPVANIDIAILVFSAVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASES
CCCCCEECCCCCCCEEEEEEEECCCCCCCCCHHHHEEEEEECCCCCEEEEEECCCCCCCC
EKEQIAVYKDIYEAIGYDVFVTNDEPDKEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSD
CHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCC
LTLKTAEISNALGRGKHTTRHVELMPIGDGFVADTPGFSSIEWDDLQPETLQFCFPEMED
EEEEHHHHHHHHHCCCCCEEEEEEEECCCCCEECCCCCCCCCCCCCCHHHHHHHCCCHHH
RRSGCKFRGCMHDNEPNCAVKTAVEANEIAEFRYKHYIQILQELKNRKPRY
HHCCCEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLEGQIIKALSGFYYVFSEGKVYQCRARGNFRKRNISPLVGDDVEFQIENKTDGYILDVM
CCCCHHHHHHCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEE
SRENALVRPPVANIDIAILVFSAVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASES
CCCCCEECCCCCCCEEEEEEEECCCCCCCCCHHHHEEEEEECCCCCEEEEEECCCCCCCC
EKEQIAVYKDIYEAIGYDVFVTNDEPDKEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSD
CHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCC
LTLKTAEISNALGRGKHTTRHVELMPIGDGFVADTPGFSSIEWDDLQPETLQFCFPEMED
EEEEHHHHHHHHHCCCCCEEEEEEEECCCCCEECCCCCCCCCCCCCCHHHHHHHCCCHHH
RRSGCKFRGCMHDNEPNCAVKTAVEANEIAEFRYKHYIQILQELKNRKPRY
HHCCCEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: GTP [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA