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The map label for this gene is pduB [H]

Identifier: 226223753

GI number: 226223753

Start: 1163957

End: 1164760

Strand: Direct

Name: pduB [H]

Synonym: Lm4b_01157b

Alternate gene names: 226223753

Gene position: 1163957-1164760 (Clockwise)

Preceding gene: 226223752

Following gene: 226223754

Centisome position: 39.96

GC content: 41.79

Gene sequence:

>804_bases
ATGAGTGAGCAAAATAAACTAATTGACGAAATTCTAAAACAGGTAATGGAAACGGTTAATGATGCCCCGGAAAAACTAGT
AGAGGATGGAGGATCACGTCAAATGAGTGAAAAAGCAGTTCAATTAACAGAATTTGTAGGAACAGCAATAGGAGATACAA
TCGGCCTAGTGATTGCGAATGTAGACGGACAACTTTTAGAAGCAATGAAGCTTGAAAAGTCTTACCGTTCTATAGGTATT
TTAGGAGCCCGTACTGGTGCAGGCCCACATATTATGGCAGCAGATGAAGCTGTAAAAGCAACAAATACAGAAGTAGTAAA
AATCGAATTACCACGTGATACAAAAGGCGGTGCGGGTCACGGTTCTTTAATTATCTTTGGTGGTGATGATGTTTCTGATG
TCAAACGTGCAGTTGAAGTTGCACTGAATGAATTAGATAAAACTTTCGGAGATGTTTACGGCAACGAAGCTGGACACATC
GAACTTCAATATACAGCGCGAGCAAGTCATGCACTTAATACAGCATTCGGCGCACCTGTAGGAAAAGCATTCGGTCTTAT
GGTTGGTGCACCGGCTGGGATTGGCGTTGTTATGGCAGATACTGCAGTGAAATCCGCTAACGTAGATGTCGTTGCATATT
CCTCGCCAGCAGATGGAACAAGTTTCTCCAATGAAGTGATTCTTTGTATTTCTGGAGATTCTGGTGCAGTCCGTCAAGCT
GTTATTTCAGCACGTGAAATTGGTAAAAAATTACTTGGAGCTTTAGGGGATGAACCGAAAAATGATCGTCCATCCTACAT
TTAG

Upstream 100 bases:

>100_bases
GCGGCAGCAGCAAGAAATGTAGGTACCGTGATGAGTACACATGTTATTCCTCGTCCGCATACTGATGTGGAAGAAATTTT
ACCAGTGAGGGTGAAGTCAG

Downstream 100 bases:

>100_bases
AACGGAGGGTAACGACTGATGAAATCAAAACGCTTTGAAGAATTAGCAAAACGCCCGGTCAATCAAGATGGTTTTGTAAA
AGAATGGATTGAAGAAGGCC

Product: PduB protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSEQNKLIDEILKQVMETVNDAPEKLVEDGGSRQMSEKAVQLTEFVGTAIGDTIGLVIANVDGQLLEAMKLEKSYRSIGI
LGARTGAGPHIMAADEAVKATNTEVVKIELPRDTKGGAGHGSLIIFGGDDVSDVKRAVEVALNELDKTFGDVYGNEAGHI
ELQYTARASHALNTAFGAPVGKAFGLMVGAPAGIGVVMADTAVKSANVDVVAYSSPADGTSFSNEVILCISGDSGAVRQA
VISAREIGKKLLGALGDEPKNDRPSYI

Sequences:

>Translated_267_residues
MSEQNKLIDEILKQVMETVNDAPEKLVEDGGSRQMSEKAVQLTEFVGTAIGDTIGLVIANVDGQLLEAMKLEKSYRSIGI
LGARTGAGPHIMAADEAVKATNTEVVKIELPRDTKGGAGHGSLIIFGGDDVSDVKRAVEVALNELDKTFGDVYGNEAGHI
ELQYTARASHALNTAFGAPVGKAFGLMVGAPAGIGVVMADTAVKSANVDVVAYSSPADGTSFSNEVILCISGDSGAVRQA
VISAREIGKKLLGALGDEPKNDRPSYI
>Mature_266_residues
SEQNKLIDEILKQVMETVNDAPEKLVEDGGSRQMSEKAVQLTEFVGTAIGDTIGLVIANVDGQLLEAMKLEKSYRSIGIL
GARTGAGPHIMAADEAVKATNTEVVKIELPRDTKGGAGHGSLIIFGGDDVSDVKRAVEVALNELDKTFGDVYGNEAGHIE
LQYTARASHALNTAFGAPVGKAFGLMVGAPAGIGVVMADTAVKSANVDVVAYSSPADGTSFSNEVILCISGDSGAVRQAV
ISAREIGKKLLGALGDEPKNDRPSYI

Specific function: May Be Involved In The Formation Of A Specific Microcompartiment In The Cell In Which The Metabolism Of Potentially Toxic By-Products Takes Place. [C]

COG id: COG4816

COG function: function code E; Ethanolamine utilization protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EutL/PduB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009193
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 27799; Mature: 27668

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQNKLIDEILKQVMETVNDAPEKLVEDGGSRQMSEKAVQLTEFVGTAIGDTIGLVIAN
CCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEEC
VDGQLLEAMKLEKSYRSIGILGARTGAGPHIMAADEAVKATNTEVVKIELPRDTKGGAGH
CCHHHHHHHHHHHHHHHHEEEEECCCCCCEEEECCHHHHCCCCEEEEEECCCCCCCCCCC
GSLIIFGGDDVSDVKRAVEVALNELDKTFGDVYGNEAGHIELQYTARASHALNTAFGAPV
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCH
GKAFGLMVGAPAGIGVVMADTAVKSANVDVVAYSSPADGTSFSNEVILCISGDSGAVRQA
HHHHHHHEECCCCCEEEEECCHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCHHHHHH
VISAREIGKKLLGALGDEPKNDRPSYI
HHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SEQNKLIDEILKQVMETVNDAPEKLVEDGGSRQMSEKAVQLTEFVGTAIGDTIGLVIAN
CHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEEC
VDGQLLEAMKLEKSYRSIGILGARTGAGPHIMAADEAVKATNTEVVKIELPRDTKGGAGH
CCHHHHHHHHHHHHHHHHEEEEECCCCCCEEEECCHHHHCCCCEEEEEECCCCCCCCCCC
GSLIIFGGDDVSDVKRAVEVALNELDKTFGDVYGNEAGHIELQYTARASHALNTAFGAPV
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCH
GKAFGLMVGAPAGIGVVMADTAVKSANVDVVAYSSPADGTSFSNEVILCISGDSGAVRQA
HHHHHHHEECCCCCEEEEECCHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCHHHHHH
VISAREIGKKLLGALGDEPKNDRPSYI
HHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609 [H]