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The map label for this gene is yhjH [H]

Identifier: 226223458

GI number: 226223458

Start: 872361

End: 872831

Strand: Reverse

Name: yhjH [H]

Synonym: Lm4b_00856

Alternate gene names: 226223458

Gene position: 872831-872361 (Counterclockwise)

Preceding gene: 226223461

Following gene: 226223457

Centisome position: 29.97

GC content: 35.67

Gene sequence:

>471_bases
ATGGATAAAAATGAACAAGTCATGGCGAACGTCAGAGATTTATTTAATAAGCTCGCTTGGATTAATAAAGTGAAGATGGA
AAAAGCGCTAGAGGGATATAAACCTTCTGAAGTCCACTGCATCGAATACATTGCCAAAAATGAAGATCCTAATGTAACGA
AACTCGCGGAAGCCTTCTATATGACAAAGAGCGCGATTAGCAAAATTACAAAAAAGCTGATGGATAAAGGCTATATTGAA
AGTTATCAAAAACCGGAGAATAAGAAAGAAATTTATTTCCGTCTAACAGCTAAAGGCGCTGAAATTAACCAAGTCCACGA
TGATTTGCATCAAGAATTCCTCGATCGTGACAAGGTAGTTTTCGAAGACGTAACGGATGCACAATATGCGGAAGTGTTAA
AATTTGTGGATAAATATAGTCGTCATTTAGATAATGAAATGCAGAAAGTTTACAATCAAAAATCCGAATAA

Upstream 100 bases:

>100_bases
GCGCTTTCAAGTTCCCCTTTTAGCTACGAAAGGCAATAAATAGTTGAACCGGACACAAAAAACAGCTATACTACAAGCAG
ATAGAGTAGGAGGGCATGGC

Downstream 100 bases:

>100_bases
ACCTAGTAACAGCCTAATTTTTCAAGTTAGGTTGTTTTTTATTGTTTTATTTTTGTTGACAAGGAAACAAAAACGAGTTA
AGCTAATTATGTTTCCTAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MDKNEQVMANVRDLFNKLAWINKVKMEKALEGYKPSEVHCIEYIAKNEDPNVTKLAEAFYMTKSAISKITKKLMDKGYIE
SYQKPENKKEIYFRLTAKGAEINQVHDDLHQEFLDRDKVVFEDVTDAQYAEVLKFVDKYSRHLDNEMQKVYNQKSE

Sequences:

>Translated_156_residues
MDKNEQVMANVRDLFNKLAWINKVKMEKALEGYKPSEVHCIEYIAKNEDPNVTKLAEAFYMTKSAISKITKKLMDKGYIE
SYQKPENKKEIYFRLTAKGAEINQVHDDLHQEFLDRDKVVFEDVTDAQYAEVLKFVDKYSRHLDNEMQKVYNQKSE
>Mature_156_residues
MDKNEQVMANVRDLFNKLAWINKVKMEKALEGYKPSEVHCIEYIAKNEDPNVTKLAEAFYMTKSAISKITKKLMDKGYIE
SYQKPENKKEIYFRLTAKGAEINQVHDDLHQEFLDRDKVVFEDVTDAQYAEVLKFVDKYSRHLDNEMQKVYNQKSE

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18423; Mature: 18423

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKNEQVMANVRDLFNKLAWINKVKMEKALEGYKPSEVHCIEYIAKNEDPNVTKLAEAFY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
MTKSAISKITKKLMDKGYIESYQKPENKKEIYFRLTAKGAEINQVHDDLHQEFLDRDKVV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCHHH
FEDVTDAQYAEVLKFVDKYSRHLDNEMQKVYNQKSE
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDKNEQVMANVRDLFNKLAWINKVKMEKALEGYKPSEVHCIEYIAKNEDPNVTKLAEAFY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
MTKSAISKITKKLMDKGYIESYQKPENKKEIYFRLTAKGAEINQVHDDLHQEFLDRDKVV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCHHH
FEDVTDAQYAEVLKFVDKYSRHLDNEMQKVYNQKSE
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9457850; 9384377 [H]