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The map label for this gene is ygbI [H]

Identifier: 225686004

GI number: 225686004

Start: 138272

End: 139063

Strand: Reverse

Name: ygbI [H]

Synonym: BMEA_B0147

Alternate gene names: 225686004

Gene position: 139063-138272 (Counterclockwise)

Preceding gene: 225686005

Following gene: 225686003

Centisome position: 11.73

GC content: 57.58

Gene sequence:

>792_bases
ATGATACCGGCTGAACGGCAGGCTCTGATTGTCAGCCGCCTTTCGGCGCGCGGCATCTTGAGCATTGCGGAACTGGCCGA
AATGCTGGGCGTATCGCCAATGACGGTGCGCCGCGATATTCATTCGCTGGAAGAACAGGGGCGTGCGCTTTCCGTGGCTG
GCGGCGTACAGCTTCCTGAACGGATTTTCAGCGAGCCTTCCCATATCGTCAAGGCGGCCCTTTACCACAATGAGAAAGCG
GCGATCGGTCAGCTTGCGGCACAGATGATAAGACCCGGAACGGTGATCTATCTCGATGCGGGTACAACCACGCTTGAAAT
AGCCTACCGGCTCACAGACCGGCAGGACCTCACGGTCGTCACCAATGATTTCGTGATTGCCGCGTTCCTTTCGCAGGAGA
GCAATTGCAAGCTTTTCCATACGGGCGGCGAAGTGGAACGAGAAAACCAATCCTGCGTGGGAAGTGCCGCCGGGGAGGCC
ATCCGTCGTTTCAACTTCGATCTCGCATTCATCTCGACATCCTCATTCGGCGCGCGTGGTGTGTCCACGCCCTCCGAAAA
CAAGATCGCCGTAAAACGCGCCGTCGTTGAAAGTGCGGTTCGCAGGGTGCTTGTAACAGACAGCAGCAAATACGGCCTCA
TCGGCACATTCAATGCAATCCCGCTCGACGTGTTGTCCGCCGTCGTTACCGATGCGGGCCTGCCCGAAAATGCGCGGGAA
ACAATCACGCAGCGCGGCGTCGAGTTGCATCTGGTTGAAGCCGGCACAGGCAAAGTCGAAGGGAAAATCTGA

Upstream 100 bases:

>100_bases
AGAGTGTCGGCTATCGGGGATGGGTGGGATGCGAATATAATCCGCGGGGCAAAACGGAAAGCGGCCTCGCCTGGTTTGCC
CCATACCGGGATCAAAGCGC

Downstream 100 bases:

>100_bases
TGGCTAAAATCGTCGTTACCGGGGGCGCCGGCTTCCTGGGCAGTCGTTTGATCCGTGGGCTTCTGGCATCGCGGGGACAA
AACGGGGTTCCCTCTTTCGA

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MIPAERQALIVSRLSARGILSIAELAEMLGVSPMTVRRDIHSLEEQGRALSVAGGVQLPERIFSEPSHIVKAALYHNEKA
AIGQLAAQMIRPGTVIYLDAGTTTLEIAYRLTDRQDLTVVTNDFVIAAFLSQESNCKLFHTGGEVERENQSCVGSAAGEA
IRRFNFDLAFISTSSFGARGVSTPSENKIAVKRAVVESAVRRVLVTDSSKYGLIGTFNAIPLDVLSAVVTDAGLPENARE
TITQRGVELHLVEAGTGKVEGKI

Sequences:

>Translated_263_residues
MIPAERQALIVSRLSARGILSIAELAEMLGVSPMTVRRDIHSLEEQGRALSVAGGVQLPERIFSEPSHIVKAALYHNEKA
AIGQLAAQMIRPGTVIYLDAGTTTLEIAYRLTDRQDLTVVTNDFVIAAFLSQESNCKLFHTGGEVERENQSCVGSAAGEA
IRRFNFDLAFISTSSFGARGVSTPSENKIAVKRAVVESAVRRVLVTDSSKYGLIGTFNAIPLDVLSAVVTDAGLPENARE
TITQRGVELHLVEAGTGKVEGKI
>Mature_263_residues
MIPAERQALIVSRLSARGILSIAELAEMLGVSPMTVRRDIHSLEEQGRALSVAGGVQLPERIFSEPSHIVKAALYHNEKA
AIGQLAAQMIRPGTVIYLDAGTTTLEIAYRLTDRQDLTVVTNDFVIAAFLSQESNCKLFHTGGEVERENQSCVGSAAGEA
IRRFNFDLAFISTSSFGARGVSTPSENKIAVKRAVVESAVRRVLVTDSSKYGLIGTFNAIPLDVLSAVVTDAGLPENARE
TITQRGVELHLVEAGTGKVEGKI

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=249, Percent_Identity=52.2088353413655, Blast_Score=272, Evalue=1e-74,
Organism=Escherichia coli, GI1789519, Length=252, Percent_Identity=32.9365079365079, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1789829, Length=252, Percent_Identity=29.7619047619048, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789059, Length=251, Percent_Identity=30.6772908366534, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1787540, Length=252, Percent_Identity=25.3968253968254, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788069, Length=214, Percent_Identity=27.1028037383178, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790753, Length=235, Percent_Identity=27.2340425531915, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI87082344, Length=216, Percent_Identity=28.7037037037037, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1789170, Length=235, Percent_Identity=28.936170212766, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1790635, Length=214, Percent_Identity=24.7663551401869, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787063, Length=251, Percent_Identity=27.8884462151394, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28218; Mature: 28218

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPAERQALIVSRLSARGILSIAELAEMLGVSPMTVRRDIHSLEEQGRALSVAGGVQLPE
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCH
RIFSEPSHIVKAALYHNEKAAIGQLAAQMIRPGTVIYLDAGTTTLEIAYRLTDRQDLTVV
HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEEEEECCCCCEEEE
TNDFVIAAFLSQESNCKLFHTGGEVERENQSCVGSAAGEAIRRFNFDLAFISTSSFGARG
ECCEEEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC
VSTPSENKIAVKRAVVESAVRRVLVTDSSKYGLIGTFNAIPLDVLSAVVTDAGLPENARE
CCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCEEEECCCCHHHHHHHHHHCCCCCCHHHH
TITQRGVELHLVEAGTGKVEGKI
HHHHCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MIPAERQALIVSRLSARGILSIAELAEMLGVSPMTVRRDIHSLEEQGRALSVAGGVQLPE
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCH
RIFSEPSHIVKAALYHNEKAAIGQLAAQMIRPGTVIYLDAGTTTLEIAYRLTDRQDLTVV
HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEEEEECCCCCEEEE
TNDFVIAAFLSQESNCKLFHTGGEVERENQSCVGSAAGEAIRRFNFDLAFISTSSFGARG
ECCEEEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC
VSTPSENKIAVKRAVVESAVRRVLVTDSSKYGLIGTFNAIPLDVLSAVVTDAGLPENARE
CCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCEEEECCCCHHHHHHHHHHCCCCCCHHHH
TITQRGVELHLVEAGTGKVEGKI
HHHHCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]