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The map label for this gene is ybaK [C]

Identifier: 222526965

GI number: 222526965

Start: 4665477

End: 4665956

Strand: Direct

Name: ybaK [C]

Synonym: Chy400_3743

Alternate gene names: 222526965

Gene position: 4665477-4665956 (Clockwise)

Preceding gene: 222526964

Following gene: 222526966

Centisome position: 88.55

GC content: 54.79

Gene sequence:

>480_bases
ATGACTACCAAACTGAACTCAATGCGTCTTCTTGAACGTCATCACATCGCGTACACTGTGCATGAGTACGAATACAACGA
TGCATACGACGCGCAAACAATTGCCCGGATGATCGGGGTGCCGGCAAGTCAGGTATTCAAGACCCTCGTTGTTGGTGGTG
CCGGTGTGCGACCAATTCTGGCAATGGTTCCGGCTGACGCACAACTGTCACTGAAGCGCCTGGCAGCGCTGATCGGCGTC
AAATCGCTTGATCTACTCCCGCGCGCCGACGTCGAGCGTCTGACCGGCTTACAAATTGGCGGGATTGGTGCGTTGGCGTT
AACCGCAAAAGGGTGGACATCGTACCTCGATGAGTCTGCACTGCAATATCCGGTCGTGTATGTCAATGCCGGAAAGCGGG
GCATACTTCTCGGATTAGCACCAACCGAACTGGTGCGCGTGGTAGGGGCAAAGGTTGGTGCAATTGCTGAACGAGGATAG

Upstream 100 bases:

>100_bases
AATGGAACGATTGCCGTTACCAGTCAGCCCGGTAGCGGTACAACGTTCTTGATTACGCTTCCCCTGCCTTCTGATCAGAC
TGACACCCTGAGTGACACCT

Downstream 100 bases:

>100_bases
GGAGGGAGTTTCCTGCCGGAACTTCGGTCTGGTTCAGGCCCTTGCAGAAGAGGATGTGTTTGGTATCGATAGTTGATACC
TGCGGGGCAATCGGCTACGA

Product: YbaK/prolyl-tRNA synthetase associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MTTKLNSMRLLERHHIAYTVHEYEYNDAYDAQTIARMIGVPASQVFKTLVVGGAGVRPILAMVPADAQLSLKRLAALIGV
KSLDLLPRADVERLTGLQIGGIGALALTAKGWTSYLDESALQYPVVYVNAGKRGILLGLAPTELVRVVGAKVGAIAERG

Sequences:

>Translated_159_residues
MTTKLNSMRLLERHHIAYTVHEYEYNDAYDAQTIARMIGVPASQVFKTLVVGGAGVRPILAMVPADAQLSLKRLAALIGV
KSLDLLPRADVERLTGLQIGGIGALALTAKGWTSYLDESALQYPVVYVNAGKRGILLGLAPTELVRVVGAKVGAIAERG
>Mature_158_residues
TTKLNSMRLLERHHIAYTVHEYEYNDAYDAQTIARMIGVPASQVFKTLVVGGAGVRPILAMVPADAQLSLKRLAALIGVK
SLDLLPRADVERLTGLQIGGIGALALTAKGWTSYLDESALQYPVVYVNAGKRGILLGLAPTELVRVVGAKVGAIAERG

Specific function: Affects the expression of the receptor, named binding substance, that mediates mating aggregate formation. Could be a regulatory protein that suppresses the function or expression of ebsA and/or ebsMB [H]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=156, Percent_Identity=32.0512820512821, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16981; Mature: 16850

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKLNSMRLLERHHIAYTVHEYEYNDAYDAQTIARMIGVPASQVFKTLVVGGAGVRPIL
CCCCCHHHHHHHHHCEEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCHHH
AMVPADAQLSLKRLAALIGVKSLDLLPRADVERLTGLQIGGIGALALTAKGWTSYLDESA
EECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEECCCEEEEEECCHHHHHHHHHH
LQYPVVYVNAGKRGILLGLAPTELVRVVGAKVGAIAERG
HCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TTKLNSMRLLERHHIAYTVHEYEYNDAYDAQTIARMIGVPASQVFKTLVVGGAGVRPIL
CCCCHHHHHHHHHCEEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCHHH
AMVPADAQLSLKRLAALIGVKSLDLLPRADVERLTGLQIGGIGALALTAKGWTSYLDESA
EECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEECCCEEEEEECCHHHHHHHHHH
LQYPVVYVNAGKRGILLGLAPTELVRVVGAKVGAIAERG
HCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226689; 12663927 [H]