Click here to switch to the map view.

The map label for this gene is ganQ [H]

Identifier: 222526638

GI number: 222526638

Start: 4243613

End: 4244458

Strand: Direct

Name: ganQ [H]

Synonym: Chy400_3406

Alternate gene names: 222526638

Gene position: 4243613-4244458 (Clockwise)

Preceding gene: 222526637

Following gene: 222526639

Centisome position: 80.54

GC content: 53.31

Gene sequence:

>846_bases
ATGATTCGCAAGCCTTCTCGACCGGTGTTGGTGTTGCAGTACACCATCCTTATTCTCGGCGTGCTGTTTGCTGTCTATCC
GCTCTGGTTTGCTTTTCTCGCCTCTGGTCGTACCGGTGATCGCCTCTACACGCTCAATCTGCTCGGAATGTTTATTCCCA
CGGAATGGACGTTCGAGAACTATCGGGCGATGATCTTCGACCGGCCACTCCTGACGTGGTTGCGTAATAGCATCTATGTC
GCTGGTGTGACGACGGTTGCCTCGCTGGTCATTACTACCTCAGCCGCATTTGCCTTTTCGCGCTTTAAGTTTTACGGTCG
CGAGTTTGCTCTGATTTTGCTGCTGGCAATTCAGACCTTCCCCGGTGTGTTGAGTCTGGTTGCGGTTGCCCAGTTGCTGA
CGGCGTTGGGGCTGTATGGCAAGCACGAAGGGCTTATTCTGGCTTATACAACCGGTACCCTCGTCTTTAGTACCTGGAAT
ATGAAGGGCTATTTCGATACCATTCCGATTGAGCTGGAAGAAGCGGCAATGATCGATGGCTGTGGTCCGATCCAGTCGTT
TATCTTAATCGCATTGCCCCTGGCCCGTCCTGCACTGGCGGTTACCGCACTGCTCGGTTTCCTGGCCGGGTGGGGTGATT
TCATCTTTGCCTCGGTGCTGGTACCGGCTCCCGATAGCATGAAGCTGGTGGTTCCCGGCCTGTTCAGTCTTGCCAATAGC
CAGAGCGTGCCGTGGGGTAATTTTGCGGCTGGTGGTTTGTTGATTATCCTACCGACCATTATTGTCTTTTTGATGCTCCA
GCGCTTCCTGGTGTCGGGATTAACGGTTGGTGGTGTAAAGGGATAA

Upstream 100 bases:

>100_bases
GTAACGCGACCGCTTTTGCCGTCATTCTCTTCATTTTCCTGTTTACGGCTACCCTCTATAGCCTCCGGTTGACGCGCATC
ACGAAAGGGGCCTACGAGTC

Downstream 100 bases:

>100_bases
ATCAGCGTGCGTTCCGGTGTCTCTCGTGGCCGACTGATCGGCGTGATCGTCCTGGCCGCTCTCTTGCGCTTGTGGGCAGT
ACTAACGTTGCCGGTTGATT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MIRKPSRPVLVLQYTILILGVLFAVYPLWFAFLASGRTGDRLYTLNLLGMFIPTEWTFENYRAMIFDRPLLTWLRNSIYV
AGVTTVASLVITTSAAFAFSRFKFYGREFALILLLAIQTFPGVLSLVAVAQLLTALGLYGKHEGLILAYTTGTLVFSTWN
MKGYFDTIPIELEEAAMIDGCGPIQSFILIALPLARPALAVTALLGFLAGWGDFIFASVLVPAPDSMKLVVPGLFSLANS
QSVPWGNFAAGGLLIILPTIIVFLMLQRFLVSGLTVGGVKG

Sequences:

>Translated_281_residues
MIRKPSRPVLVLQYTILILGVLFAVYPLWFAFLASGRTGDRLYTLNLLGMFIPTEWTFENYRAMIFDRPLLTWLRNSIYV
AGVTTVASLVITTSAAFAFSRFKFYGREFALILLLAIQTFPGVLSLVAVAQLLTALGLYGKHEGLILAYTTGTLVFSTWN
MKGYFDTIPIELEEAAMIDGCGPIQSFILIALPLARPALAVTALLGFLAGWGDFIFASVLVPAPDSMKLVVPGLFSLANS
QSVPWGNFAAGGLLIILPTIIVFLMLQRFLVSGLTVGGVKG
>Mature_281_residues
MIRKPSRPVLVLQYTILILGVLFAVYPLWFAFLASGRTGDRLYTLNLLGMFIPTEWTFENYRAMIFDRPLLTWLRNSIYV
AGVTTVASLVITTSAAFAFSRFKFYGREFALILLLAIQTFPGVLSLVAVAQLLTALGLYGKHEGLILAYTTGTLVFSTWN
MKGYFDTIPIELEEAAMIDGCGPIQSFILIALPLARPALAVTALLGFLAGWGDFIFASVLVPAPDSMKLVVPGLFSLANS
QSVPWGNFAAGGLLIILPTIIVFLMLQRFLVSGLTVGGVKG

Specific function: Could be part of a binding-protein-dependent transport system for arabinogalactan oligomers; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG3833

COG function: function code G; ABC-type maltose transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1790464, Length=219, Percent_Identity=44.2922374429224, Blast_Score=160, Evalue=6e-41,
Organism=Escherichia coli, GI1787571, Length=272, Percent_Identity=33.8235294117647, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789860, Length=281, Percent_Identity=25.6227758007117, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30613; Mature: 30613

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKPSRPVLVLQYTILILGVLFAVYPLWFAFLASGRTGDRLYTLNLLGMFIPTEWTFEN
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCCCCCCC
YRAMIFDRPLLTWLRNSIYVAGVTTVASLVITTSAAFAFSRFKFYGREFALILLLAIQTF
CCEEEECCHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PGVLSLVAVAQLLTALGLYGKHEGLILAYTTGTLVFSTWNMKGYFDTIPIELEEAAMIDG
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEECCCCCEECCCCEEEHHHHHCCC
CGPIQSFILIALPLARPALAVTALLGFLAGWGDFIFASVLVPAPDSMKLVVPGLFSLANS
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHCCC
QSVPWGNFAAGGLLIILPTIIVFLMLQRFLVSGLTVGGVKG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIRKPSRPVLVLQYTILILGVLFAVYPLWFAFLASGRTGDRLYTLNLLGMFIPTEWTFEN
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCCCCCCC
YRAMIFDRPLLTWLRNSIYVAGVTTVASLVITTSAAFAFSRFKFYGREFALILLLAIQTF
CCEEEECCHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PGVLSLVAVAQLLTALGLYGKHEGLILAYTTGTLVFSTWNMKGYFDTIPIELEEAAMIDG
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEECCCCCEECCCCEEEHHHHHCCC
CGPIQSFILIALPLARPALAVTALLGFLAGWGDFIFASVLVPAPDSMKLVVPGLFSLANS
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHCCC
QSVPWGNFAAGGLLIILPTIIVFLMLQRFLVSGLTVGGVKG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]