Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
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Accession | NC_012032 |
Length | 5,268,950 |
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The map label for this gene is tssA [H]
Identifier: 222525385
GI number: 222525385
Start: 2705705
End: 2706601
Strand: Direct
Name: tssA [H]
Synonym: Chy400_2130
Alternate gene names: 222525385
Gene position: 2705705-2706601 (Clockwise)
Preceding gene: 222525384
Following gene: 222525403
Centisome position: 51.35
GC content: 58.64
Gene sequence:
>897_bases ATGAGCCTGGAATTACCATCAGGGCCACTCGTCGAAACCGACTGGCTGGCTGCCCATCTTGGGCATCCCAAACTCCGCAT CGTTGACATGCGCGGTACCGTTTTGCCACCCTCTGCCCCTAAACCGCACTACTTTGCCCGCCACGACGACTACGCCGCCG GGCATATTCCCGGCGCTGTCTACATTGATTGGACACGTGATATTGTTGATCTTGACGATCCAACCCCTGTGCAGGTAGCA CCACCCGCCAAAATCGCTGAAGAATTGGGAAAGCGCGGTATCGGTGACGATTGTGTAGTGGTTGCCTACGACGACTGGTA TTCGATGTTTGCCGGGCGTCTGATGTGGGTACTACGGTATTACGGGTTTGAGCAGGTGCGCGTGCTGAATGGTGGCATGG TCAAATGGGTTGCCGAGGGCCGACCGTTGACGACGGAAGTGCCAGACTATCCGCCGGCGATCTTTACCCCTCGCCCCCAG CCACACCTGCGTAAGACCGCCGACCAGGTGCTGCAAGCCCTGGGTAGCGATCTGCTCTTGATTGATGCCCGTCATGAACG GGAGTATCAAGGCTTCGAGTCGCGTGCCGCTCGCGGCGGCCACATCCCCGGTGCACGCAATGTCTTTTATCAGAGCCTGG TCAGCGGGCCGCATCAAACCTATCTCTCACCCGATCAACTCCGCGAACGTTTTCTTGCCGCCGGAATTGATCCTGACGCC ACGACTGATCGTGAGGTCGTCGCCTACTGCAACGGCGGTGTTTCGGCGACACCCACAGCCATCGCCTTTGAACTGGTGAG TGGTCGCCGGGTCGCGATCTACGATGGTTCGTGGAATGAGTGGGGTAACGATCCAACCAAACCGCTTGAACGAGCGGAAG CGTCGTCGGGCGAGTAG
Upstream 100 bases:
>100_bases ACTGTTTTAACCACAGAGACACAAAGGACACAGAGGTGGCTATTCTCTGTGCCTCTGTGGTGCAATAACCCACCAGCGTG CTGATACAAAGAGGGATCGT
Downstream 100 bases:
>100_bases TACCACATCAGTCGCAGCACGCTATCCAACTATCACCCTGGTACCGCATTTGAACGATGAACTGCTTCCCTCGTATGACA ATGTGAAACAGCATATGCCC
Product: Rhodanese domain-containing protein
Products: NA
Alternate protein names: Rhodanese-like protein [H]
Number of amino acids: Translated: 298; Mature: 297
Protein sequence:
>298_residues MSLELPSGPLVETDWLAAHLGHPKLRIVDMRGTVLPPSAPKPHYFARHDDYAAGHIPGAVYIDWTRDIVDLDDPTPVQVA PPAKIAEELGKRGIGDDCVVVAYDDWYSMFAGRLMWVLRYYGFEQVRVLNGGMVKWVAEGRPLTTEVPDYPPAIFTPRPQ PHLRKTADQVLQALGSDLLLIDARHEREYQGFESRAARGGHIPGARNVFYQSLVSGPHQTYLSPDQLRERFLAAGIDPDA TTDREVVAYCNGGVSATPTAIAFELVSGRRVAIYDGSWNEWGNDPTKPLERAEASSGE
Sequences:
>Translated_298_residues MSLELPSGPLVETDWLAAHLGHPKLRIVDMRGTVLPPSAPKPHYFARHDDYAAGHIPGAVYIDWTRDIVDLDDPTPVQVA PPAKIAEELGKRGIGDDCVVVAYDDWYSMFAGRLMWVLRYYGFEQVRVLNGGMVKWVAEGRPLTTEVPDYPPAIFTPRPQ PHLRKTADQVLQALGSDLLLIDARHEREYQGFESRAARGGHIPGARNVFYQSLVSGPHQTYLSPDQLRERFLAAGIDPDA TTDREVVAYCNGGVSATPTAIAFELVSGRRVAIYDGSWNEWGNDPTKPLERAEASSGE >Mature_297_residues SLELPSGPLVETDWLAAHLGHPKLRIVDMRGTVLPPSAPKPHYFARHDDYAAGHIPGAVYIDWTRDIVDLDDPTPVQVAP PAKIAEELGKRGIGDDCVVVAYDDWYSMFAGRLMWVLRYYGFEQVRVLNGGMVKWVAEGRPLTTEVPDYPPAIFTPRPQP HLRKTADQVLQALGSDLLLIDARHEREYQGFESRAARGGHIPGARNVFYQSLVSGPHQTYLSPDQLRERFLAAGIDPDAT TDREVVAYCNGGVSATPTAIAFELVSGRRVAIYDGSWNEWGNDPTKPLERAEASSGE
Specific function: May be a sulfotransferase involved in the formation of thiosulfate [H]
COG id: COG2897
COG function: function code P; Rhodanese-related sulfurtransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 rhodanese domains [H]
Homologues:
Organism=Homo sapiens, GI17402865, Length=285, Percent_Identity=33.6842105263158, Blast_Score=125, Evalue=4e-29, Organism=Homo sapiens, GI194473668, Length=282, Percent_Identity=29.7872340425532, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI61835204, Length=282, Percent_Identity=29.7872340425532, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI194473681, Length=282, Percent_Identity=29.7872340425532, Blast_Score=99, Evalue=4e-21, Organism=Escherichia coli, GI87082121, Length=285, Percent_Identity=29.8245614035088, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI87081967, Length=258, Percent_Identity=29.4573643410853, Blast_Score=77, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17561888, Length=287, Percent_Identity=26.8292682926829, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71997283, Length=316, Percent_Identity=24.6835443037975, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324825, Length=248, Percent_Identity=25.8064516129032, Blast_Score=66, Evalue=7e-12,
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001763 - InterPro: IPR001307 [H]
Pfam domain/function: PF00581 Rhodanese [H]
EC number: =2.8.1.1 [H]
Molecular weight: Translated: 32957; Mature: 32826
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: PS00380 RHODANESE_1 ; PS00683 RHODANESE_2 ; PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLELPSGPLVETDWLAAHLGHPKLRIVDMRGTVLPPSAPKPHYFARHDDYAAGHIPGAV CCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCEE YIDWTRDIVDLDDPTPVQVAPPAKIAEELGKRGIGDDCVVVAYDDWYSMFAGRLMWVLRY EEEECCCEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHH YGFEQVRVLNGGMVKWVAEGRPLTTEVPDYPPAIFTPRPQPHLRKTADQVLQALGSDLLL CCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE IDARHEREYQGFESRAARGGHIPGARNVFYQSLVSGPHQTYLSPDQLRERFLAAGIDPDA EECCCCHHHHCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC TTDREVVAYCNGGVSATPTAIAFELVSGRRVAIYDGSWNEWGNDPTKPLERAEASSGE CCCCEEEEEECCCCCCCCHHEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCC >Mature Secondary Structure SLELPSGPLVETDWLAAHLGHPKLRIVDMRGTVLPPSAPKPHYFARHDDYAAGHIPGAV CCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCEE YIDWTRDIVDLDDPTPVQVAPPAKIAEELGKRGIGDDCVVVAYDDWYSMFAGRLMWVLRY EEEECCCEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHH YGFEQVRVLNGGMVKWVAEGRPLTTEVPDYPPAIFTPRPQPHLRKTADQVLQALGSDLLL CCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE IDARHEREYQGFESRAARGGHIPGARNVFYQSLVSGPHQTYLSPDQLRERFLAAGIDPDA EECCCCHHHHCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC TTDREVVAYCNGGVSATPTAIAFELVSGRRVAIYDGSWNEWGNDPTKPLERAEASSGE CCCCEEEEEECCCCCCCCHHEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA