| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is 222524765
Identifier: 222524765
GI number: 222524765
Start: 1887523
End: 1888794
Strand: Direct
Name: 222524765
Synonym: Chy400_1492
Alternate gene names: NA
Gene position: 1887523-1888794 (Clockwise)
Preceding gene: 222524763
Following gene: 222524766
Centisome position: 35.82
GC content: 49.29
Gene sequence:
>1272_bases ATGACATCACCTAAACTTATTGCGATCAAACACCACTTACACCATGTCACCTCACCAGCAATGCTCATCCTCATTCGAGG TTTTGTAGCGGTAGCTGCTGGCTCACTTCTGGGAAGGATACTCAGCGCAGTTGCCGGTATTTTACTCGTTCGTTATTTTG AGGGGCCGGCCTTGTATGGCCAATATGCGACACTAGTTACCACTCTGACCTTGATATCAAACCTGCTGGGGCTTGGGTTT GACACGTGGTTACTCCGCGAAGGTGGTCGAGACCCCAGCCTGTTGTCGTTCAATGCTCGCCGCCTGCTAGTCCTGAAATT CGGTGCAGCCAGCATCCTTATAGGGGCATTAGTAGTGGCCTGGAACCAGACGGATCTGAGTTGGCTCATCATCGTCGGCA TGCTTGGCATCATTGCCGAGAGCTACCTTAATACCGGTTACGTAATGTTCCATGCACTCAGTCGAAATGGGCTGGTCGCT GTTTTACAGAGTCTCGACGCCTTGCTGGTAGTGGTGCTGATACTCCTGTTGATGAACTGGCCACCCCAGGTAGCGACACT GGTTGTCGGCCAGAGCATTGTAAGTGGTACTGTCCTGATAATTGCGGCAATATTACTGGCCAACCACTGGCGTGGAGCAT GGCGGCCTCTACGATTGGGGCAGTTGATACGGAGTGCCGGTTTTTTTGTTTTAGCCGATGTACTGGCAAATATCTATTCT CAGGCTCAAATCGCCATTCTGGCATTGTTTACCAGTGATGTAGATGTTGGTATATTTCGCTCTGCGATCAATCTCATCAC TATGAGTTTTCTGGTACCTATGGCAATGTTCAATGTAAGCCTACCTCTATTGAGTCGCCAAAACATTGAACGACGACAGA GGTATCATATAATTTTCGGCATATTTGGTTTAGCTACCTGTTATGGAATCATTGCCTTGTTCGGTTTTTGGTGGTTTGGC GCTGACCTGCTCCGCCTCTTCTACGGCAATAAATACGAGGCAGTGGTTCCTTTGCTGACACCACTTAGCCTGGTACCGCT CTTCAAATCCCTCAGTTTCGTTGCAGTTGCCATTATGCTGGCACTAAGTGCGCAACGCTTGCGCGTTGTTATGCAGAGTA TCGTTGTCATCCTCAGCCTGTTGTTAGGTCTGATCATCATCCCCTCCTTCGGTGTCACGGGTGCAACTGCAACGTATATC GTGGTTGAGCTAGCACTTTGTGTGTTCTATTGGATCGGCGCACTCTACACACTGCACAAGACACGCATATGA
Upstream 100 bases:
>100_bases GTTGACAAAACTTACTTATCGAATTTATCAACCGGAACTCAAAGAAACCTCTCAAACCGAAACGAAGATTTACTGAGCAA CACATCAGACAATAATAATA
Downstream 100 bases:
>100_bases AGATCGTTTTGATCAATAATCACTCAGTGTTAAATGCTGGTGATTATGCAATTCTGCTCCAGACTCTCAATCTGCTTCAC GCGGCTTTCCCGCAAGCTGA
Product: polysaccharide biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 423; Mature: 422
Protein sequence:
>423_residues MTSPKLIAIKHHLHHVTSPAMLILIRGFVAVAAGSLLGRILSAVAGILLVRYFEGPALYGQYATLVTTLTLISNLLGLGF DTWLLREGGRDPSLLSFNARRLLVLKFGAASILIGALVVAWNQTDLSWLIIVGMLGIIAESYLNTGYVMFHALSRNGLVA VLQSLDALLVVVLILLLMNWPPQVATLVVGQSIVSGTVLIIAAILLANHWRGAWRPLRLGQLIRSAGFFVLADVLANIYS QAQIAILALFTSDVDVGIFRSAINLITMSFLVPMAMFNVSLPLLSRQNIERRQRYHIIFGIFGLATCYGIIALFGFWWFG ADLLRLFYGNKYEAVVPLLTPLSLVPLFKSLSFVAVAIMLALSAQRLRVVMQSIVVILSLLLGLIIIPSFGVTGATATYI VVELALCVFYWIGALYTLHKTRI
Sequences:
>Translated_423_residues MTSPKLIAIKHHLHHVTSPAMLILIRGFVAVAAGSLLGRILSAVAGILLVRYFEGPALYGQYATLVTTLTLISNLLGLGF DTWLLREGGRDPSLLSFNARRLLVLKFGAASILIGALVVAWNQTDLSWLIIVGMLGIIAESYLNTGYVMFHALSRNGLVA VLQSLDALLVVVLILLLMNWPPQVATLVVGQSIVSGTVLIIAAILLANHWRGAWRPLRLGQLIRSAGFFVLADVLANIYS QAQIAILALFTSDVDVGIFRSAINLITMSFLVPMAMFNVSLPLLSRQNIERRQRYHIIFGIFGLATCYGIIALFGFWWFG ADLLRLFYGNKYEAVVPLLTPLSLVPLFKSLSFVAVAIMLALSAQRLRVVMQSIVVILSLLLGLIIIPSFGVTGATATYI VVELALCVFYWIGALYTLHKTRI >Mature_422_residues TSPKLIAIKHHLHHVTSPAMLILIRGFVAVAAGSLLGRILSAVAGILLVRYFEGPALYGQYATLVTTLTLISNLLGLGFD TWLLREGGRDPSLLSFNARRLLVLKFGAASILIGALVVAWNQTDLSWLIIVGMLGIIAESYLNTGYVMFHALSRNGLVAV LQSLDALLVVVLILLLMNWPPQVATLVVGQSIVSGTVLIIAAILLANHWRGAWRPLRLGQLIRSAGFFVLADVLANIYSQ AQIAILALFTSDVDVGIFRSAINLITMSFLVPMAMFNVSLPLLSRQNIERRQRYHIIFGIFGLATCYGIIALFGFWWFGA DLLRLFYGNKYEAVVPLLTPLSLVPLFKSLSFVAVAIMLALSAQRLRVVMQSIVVILSLLLGLIIIPSFGVTGATATYIV VELALCVFYWIGALYTLHKTRI
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46243; Mature: 46112
Theoretical pI: Translated: 10.35; Mature: 10.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSPKLIAIKHHLHHVTSPAMLILIRGFVAVAAGSLLGRILSAVAGILLVRYFEGPALYG CCCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH QYATLVTTLTLISNLLGLGFDTWLLREGGRDPSLLSFNARRLLVLKFGAASILIGALVVA HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEECCCEEEEEECCHHHHHHHHHHHH WNQTDLSWLIIVGMLGIIAESYLNTGYVMFHALSRNGLVAVLQSLDALLVVVLILLLMNW CCCCCHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC PPQVATLVVGQSIVSGTVLIIAAILLANHWRGAWRPLRLGQLIRSAGFFVLADVLANIYS CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH QAQIAILALFTSDVDVGIFRSAINLITMSFLVPMAMFNVSLPLLSRQNIERRQRYHIIFG HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHH IFGLATCYGIIALFGFWWFGADLLRLFYGNKYEAVVPLLTPLSLVPLFKSLSFVAVAIML HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALSAQRLRVVMQSIVVILSLLLGLIIIPSFGVTGATATYIVVELALCVFYWIGALYTLHK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH TRI CCC >Mature Secondary Structure TSPKLIAIKHHLHHVTSPAMLILIRGFVAVAAGSLLGRILSAVAGILLVRYFEGPALYG CCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH QYATLVTTLTLISNLLGLGFDTWLLREGGRDPSLLSFNARRLLVLKFGAASILIGALVVA HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEECCCEEEEEECCHHHHHHHHHHHH WNQTDLSWLIIVGMLGIIAESYLNTGYVMFHALSRNGLVAVLQSLDALLVVVLILLLMNW CCCCCHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC PPQVATLVVGQSIVSGTVLIIAAILLANHWRGAWRPLRLGQLIRSAGFFVLADVLANIYS CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH QAQIAILALFTSDVDVGIFRSAINLITMSFLVPMAMFNVSLPLLSRQNIERRQRYHIIFG HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHH IFGLATCYGIIALFGFWWFGADLLRLFYGNKYEAVVPLLTPLSLVPLFKSLSFVAVAIML HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALSAQRLRVVMQSIVVILSLLLGLIIIPSFGVTGATATYIVVELALCVFYWIGALYTLHK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH TRI CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA