| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is comM [H]
Identifier: 222524763
GI number: 222524763
Start: 1884796
End: 1886313
Strand: Direct
Name: comM [H]
Synonym: Chy400_1490
Alternate gene names: 222524763
Gene position: 1884796-1886313 (Clockwise)
Preceding gene: 222524762
Following gene: 222524765
Centisome position: 35.77
GC content: 61.86
Gene sequence:
>1518_bases ATGCTTGCCAAAGTTCTGAGCTGTGCTGTTATTGGCCTGGATGGGGTCCTGGTTGCGGTCGAAGTTGACGTCCTGAGTGG TCTACCGGCATTCAGCGTTGTCGGGCTGGGTGACGCCGCCGTCCACGAGAGTCGCGAACGGGTACGTTCAGCCGTGCGCA ATAGCGGGATGAGCTTTCCGATGCGCCGCATCACCGCCAATCTCGCTCCCGCCGATCTGCGCAAAGCCGGCCCGGCCTAC GATCTCCCCATCGCACTGGGATTATTGATTGCCACTGATCAATTGATAGCCGATGTCAGTGATGCTGTCTTTATTGGTGA ATTGGGGCTAGATGGCACGTTGCGCCATACCGACGGGATTTTGCCGATGGCAGCCGTAGCCCGTTCCCATGGCATTTCGA CCATTTACGTACCGGCTGAAGACGCCGCAGAGGCCGCACTCATCGAGGGCTTACGCATCTTCCCGATACGTTCGTTACGA GAATTGATCGCCCATCTCAGTGGTGAACGGCCATTACGACCCTACACCGGCACCACCGGCTTTACCCCGGCCCCACCAGG CGGGGCAGTCGATTTTGCCGATGTTCGCGGGCAGGAACACGTTAAACGAGCGCTGGAAGTCGCAGCAGCGGGCGGACACA ACATCCTGATGAGTGGGCCACCGGGCGCCGGCAAAACCATGCTGGCCAGAGCACTCCATTCCATTCTGCCACCGCTCAGC TTTGCCGAAGCATTGGAGGTCACCAAGATATACAGCGTCGCCGGACAACTTCCACGCGACACCCCCCTTATCCGCGAGCG CCCCTTCTGCGCACCACATCATACTGTTTCGACCGCCGGCCTGGTCGGCGGTGGGAGTCGGGTGCGACCGGGCATGATCT CGTTGGCCCATCGCGGCATCCTGTTCCTCGACGAACTACCCGAATTCGGCAATCGGCTGGAGGTCTTGCGCCAGCCCCTT GAGGATCGGATTGTCACCCTCAGCCGGGCGCATGGCAGCATCACCTATCCGGCGGCCTTCATGCTAGTCGCAGCGCAGAA CCCCTGTCCCTGTGGCTGGCATGGCGACCCGGAACGCACCTGCACCTGCTCACCGGCGCTGGTCAGCCGGTACCAGCGCC GGGTCAGCGGGCCACTGCTGGATCGGATCGACATCCACGTTGAAGCGCCGCGGGTCAAATACGACAAACTGAGCAGCCTG GCCCCGGGAGAACCATCAGCAGTCGTGCGTGAGCGCGTCATTGCAGCGCGTCAACGTCAAATCGAACGCCTCAACGGCCA TCCACGCTGCCGGAGCAATGCCGATCTCGGCCCTGCCGAAATTCGCACCTTCTGCGCCCTTGATCAGGCCGGGCAATCCC TGCTCAAATCGGCAGTCCAGCGGCTCAACCTCTCGGCACGCAGCTACCACCGCATCCTGCGCCTCGCCCGCACCATCGCC GATCTGGCCGGTGCAGAACAGATCGCCGCCGTGCATGTTGCCGAAGCGATTCAGTATCGTCCACGGCAGGTGGAGTAG
Upstream 100 bases:
>100_bases AGCAAAATTGCCAAAACCGCGCACCTTTTGCAGCCGATCTCCGGTTCTATTAATAGGACATCAGAAGTAGCAGGATAGTC TAGCGAAAGCCGGAGAAGCG
Downstream 100 bases:
>100_bases GGGAGAGGGGGCAGGACTGGCCCGAATAGAGTACGACGACTGGCTATTCCTGAAAAGGAACAACATGTTGTTGTGGCATA ACAAAGGCAAATTCTCTCCT
Product: Mg chelatase subunit ChlI
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 505; Mature: 505
Protein sequence:
>505_residues MLAKVLSCAVIGLDGVLVAVEVDVLSGLPAFSVVGLGDAAVHESRERVRSAVRNSGMSFPMRRITANLAPADLRKAGPAY DLPIALGLLIATDQLIADVSDAVFIGELGLDGTLRHTDGILPMAAVARSHGISTIYVPAEDAAEAALIEGLRIFPIRSLR ELIAHLSGERPLRPYTGTTGFTPAPPGGAVDFADVRGQEHVKRALEVAAAGGHNILMSGPPGAGKTMLARALHSILPPLS FAEALEVTKIYSVAGQLPRDTPLIRERPFCAPHHTVSTAGLVGGGSRVRPGMISLAHRGILFLDELPEFGNRLEVLRQPL EDRIVTLSRAHGSITYPAAFMLVAAQNPCPCGWHGDPERTCTCSPALVSRYQRRVSGPLLDRIDIHVEAPRVKYDKLSSL APGEPSAVVRERVIAARQRQIERLNGHPRCRSNADLGPAEIRTFCALDQAGQSLLKSAVQRLNLSARSYHRILRLARTIA DLAGAEQIAAVHVAEAIQYRPRQVE
Sequences:
>Translated_505_residues MLAKVLSCAVIGLDGVLVAVEVDVLSGLPAFSVVGLGDAAVHESRERVRSAVRNSGMSFPMRRITANLAPADLRKAGPAY DLPIALGLLIATDQLIADVSDAVFIGELGLDGTLRHTDGILPMAAVARSHGISTIYVPAEDAAEAALIEGLRIFPIRSLR ELIAHLSGERPLRPYTGTTGFTPAPPGGAVDFADVRGQEHVKRALEVAAAGGHNILMSGPPGAGKTMLARALHSILPPLS FAEALEVTKIYSVAGQLPRDTPLIRERPFCAPHHTVSTAGLVGGGSRVRPGMISLAHRGILFLDELPEFGNRLEVLRQPL EDRIVTLSRAHGSITYPAAFMLVAAQNPCPCGWHGDPERTCTCSPALVSRYQRRVSGPLLDRIDIHVEAPRVKYDKLSSL APGEPSAVVRERVIAARQRQIERLNGHPRCRSNADLGPAEIRTFCALDQAGQSLLKSAVQRLNLSARSYHRILRLARTIA DLAGAEQIAAVHVAEAIQYRPRQVE >Mature_505_residues MLAKVLSCAVIGLDGVLVAVEVDVLSGLPAFSVVGLGDAAVHESRERVRSAVRNSGMSFPMRRITANLAPADLRKAGPAY DLPIALGLLIATDQLIADVSDAVFIGELGLDGTLRHTDGILPMAAVARSHGISTIYVPAEDAAEAALIEGLRIFPIRSLR ELIAHLSGERPLRPYTGTTGFTPAPPGGAVDFADVRGQEHVKRALEVAAAGGHNILMSGPPGAGKTMLARALHSILPPLS FAEALEVTKIYSVAGQLPRDTPLIRERPFCAPHHTVSTAGLVGGGSRVRPGMISLAHRGILFLDELPEFGNRLEVLRQPL EDRIVTLSRAHGSITYPAAFMLVAAQNPCPCGWHGDPERTCTCSPALVSRYQRRVSGPLLDRIDIHVEAPRVKYDKLSSL APGEPSAVVRERVIAARQRQIERLNGHPRCRSNADLGPAEIRTFCALDQAGQSLLKSAVQRLNLSARSYHRILRLARTIA DLAGAEQIAAVHVAEAIQYRPRQVE
Specific function: Induced during competence development. Not needed for DNA uptake. May be involved in a recombination step [H]
COG id: COG0606
COG function: function code O; Predicted ATPase with chaperone activity
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]
Homologues:
Organism=Escherichia coli, GI145693202, Length=503, Percent_Identity=44.3339960238569, Blast_Score=364, Evalue=1e-102,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR001208 - InterPro: IPR004482 - InterPro: IPR000523 - InterPro: IPR020568 [H]
Pfam domain/function: PF01078 Mg_chelatase [H]
EC number: NA
Molecular weight: Translated: 54087; Mature: 54087
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAKVLSCAVIGLDGVLVAVEVDVLSGLPAFSVVGLGDAAVHESRERVRSAVRNSGMSFP CHHHHHHHHHHCCCCEEEEEEEHHHCCCCHHHEECCCHHHHHHHHHHHHHHHHHCCCCCC MRRITANLAPADLRKAGPAYDLPIALGLLIATDQLIADVSDAVFIGELGLDGTLRHTDGI HHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCC LPMAAVARSHGISTIYVPAEDAAEAALIEGLRIFPIRSLRELIAHLSGERPLRPYTGTTG HHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCEECHHHHHHHHHHHCCCCCCCCCCCCCC FTPAPPGGAVDFADVRGQEHVKRALEVAAAGGHNILMSGPPGAGKTMLARALHSILPPLS CCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCHH FAEALEVTKIYSVAGQLPRDTPLIRERPFCAPHHTVSTAGLVGGGSRVRPGMISLAHRGI HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHCCC LFLDELPEFGNRLEVLRQPLEDRIVTLSRAHGSITYPAAFMLVAAQNPCPCGWHGDPERT CEEHHHHHHHHHHHHHHHCHHHHHEEHHHCCCCEECCHHEEEEECCCCCCCCCCCCCCCC CTCSPALVSRYQRRVSGPLLDRIDIHVEAPRVKYDKLSSLAPGEPSAVVRERVIAARQRQ EECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH IERLNGHPRCRSNADLGPAEIRTFCALDQAGQSLLKSAVQRLNLSARSYHRILRLARTIA HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH DLAGAEQIAAVHVAEAIQYRPRQVE HHHCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MLAKVLSCAVIGLDGVLVAVEVDVLSGLPAFSVVGLGDAAVHESRERVRSAVRNSGMSFP CHHHHHHHHHHCCCCEEEEEEEHHHCCCCHHHEECCCHHHHHHHHHHHHHHHHHCCCCCC MRRITANLAPADLRKAGPAYDLPIALGLLIATDQLIADVSDAVFIGELGLDGTLRHTDGI HHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCC LPMAAVARSHGISTIYVPAEDAAEAALIEGLRIFPIRSLRELIAHLSGERPLRPYTGTTG HHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCEECHHHHHHHHHHHCCCCCCCCCCCCCC FTPAPPGGAVDFADVRGQEHVKRALEVAAAGGHNILMSGPPGAGKTMLARALHSILPPLS CCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCHH FAEALEVTKIYSVAGQLPRDTPLIRERPFCAPHHTVSTAGLVGGGSRVRPGMISLAHRGI HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHCCC LFLDELPEFGNRLEVLRQPLEDRIVTLSRAHGSITYPAAFMLVAAQNPCPCGWHGDPERT CEEHHHHHHHHHHHHHHHCHHHHHEEHHHCCCCEECCHHEEEEECCCCCCCCCCCCCCCC CTCSPALVSRYQRRVSGPLLDRIDIHVEAPRVKYDKLSSLAPGEPSAVVRERVIAARQRQ EECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH IERLNGHPRCRSNADLGPAEIRTFCALDQAGQSLLKSAVQRLNLSARSYHRILRLARTIA HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH DLAGAEQIAAVHVAEAIQYRPRQVE HHHCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800; 9457884 [H]