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The map label for this gene is agaR [H]

Identifier: 222524148

GI number: 222524148

Start: 1093234

End: 1094031

Strand: Reverse

Name: agaR [H]

Synonym: Chy400_0864

Alternate gene names: 222524148

Gene position: 1094031-1093234 (Counterclockwise)

Preceding gene: 222524149

Following gene: 222524147

Centisome position: 20.76

GC content: 59.27

Gene sequence:

>798_bases
ATGCAGCCCGACGAGAGCACGATTGGAGAACGCAGCCCCCTAATGCTCGACCGGCGAACCCGCATTGCCGAACTCGTGCG
GCAGCGTGGTTCAGTGCGGGTCAATGAGCTGGCCGATATTTTCGGTGTGACACCGGTCACGATTCGTAACGATCTGGCTG
CACTCGAACGTGAGGGAGTGCTGGTGCGCGATCACGGCGGTGCCGTCGCTTTGCCGGCGACCAGTGCGTTGATTGCGTTC
GAGCAACGGGCCAGTATTCGGCTTGAGGCAAAGGCACGCATCGGGGCGGCGGCGGCGCAATTTGTGCAACCCGGTGATAC
CATTCTGCTCGATGCCGGAACGACGGTGGTTGAGATGGTGAAGCATCTGCGGCAGCGGACGCCGCTGACGGTGGTGACCA
ACGCTTTGAATGTGGTCATCGAGTTACGTCATCTCAACGATGTACAGGTCTGGATGCTGGGAGGTACGGTCAACTACGCC
ACGTTCGGTACTCTCGGCCCGCTGGTTGAACAAAGCCTGGGTGATCTGGTCGTCGAGAAGCTCTTTTTGGCCGCCGAGTC
GGTCGACTCGACGTATGGTGTGACCGATTCGACCAGCGAGATTGCCCATACCAAGCGCGCATTGGCACGGGCTGCGCGGA
GGATTATCCTGCTCGCCGATTCGAGTAAGTGGCAGCGGCGTGGATTTATCAAGGTGCTGCCTTTAGAAGCAATTGAGACG
ATTATCACCGATACCGATCTGCCGGAAACCGAGCTACGTCGGTTAGAGATGGCCGGCGTGCGCGTTGTGCTGGTGTGA

Upstream 100 bases:

>100_bases
GTGTGTTCACGCGCCGGCGAACACCCTTGACGGGCCTCATGCCGGCAACGTACAATACCAACGTAAACAAACGAAACTTT
ATGCAACTGGAGATACATGC

Downstream 100 bases:

>100_bases
AGCGCCTGTCCATGCCGAAGGGGAGTGACCTACACCGGTAGGGATCGACGATCATCGGCGCGTCTCGTTAGAACTTATTT
CATAAAAAGCTGTACTGGTG

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MQPDESTIGERSPLMLDRRTRIAELVRQRGSVRVNELADIFGVTPVTIRNDLAALEREGVLVRDHGGAVALPATSALIAF
EQRASIRLEAKARIGAAAAQFVQPGDTILLDAGTTVVEMVKHLRQRTPLTVVTNALNVVIELRHLNDVQVWMLGGTVNYA
TFGTLGPLVEQSLGDLVVEKLFLAAESVDSTYGVTDSTSEIAHTKRALARAARRIILLADSSKWQRRGFIKVLPLEAIET
IITDTDLPETELRRLEMAGVRVVLV

Sequences:

>Translated_265_residues
MQPDESTIGERSPLMLDRRTRIAELVRQRGSVRVNELADIFGVTPVTIRNDLAALEREGVLVRDHGGAVALPATSALIAF
EQRASIRLEAKARIGAAAAQFVQPGDTILLDAGTTVVEMVKHLRQRTPLTVVTNALNVVIELRHLNDVQVWMLGGTVNYA
TFGTLGPLVEQSLGDLVVEKLFLAAESVDSTYGVTDSTSEIAHTKRALARAARRIILLADSSKWQRRGFIKVLPLEAIET
IITDTDLPETELRRLEMAGVRVVLV
>Mature_265_residues
MQPDESTIGERSPLMLDRRTRIAELVRQRGSVRVNELADIFGVTPVTIRNDLAALEREGVLVRDHGGAVALPATSALIAF
EQRASIRLEAKARIGAAAAQFVQPGDTILLDAGTTVVEMVKHLRQRTPLTVVTNALNVVIELRHLNDVQVWMLGGTVNYA
TFGTLGPLVEQSLGDLVVEKLFLAAESVDSTYGVTDSTSEIAHTKRALARAARRIILLADSSKWQRRGFIKVLPLEAIET
IITDTDLPETELRRLEMAGVRVVLV

Specific function: Probable repressor for the aga operon for N-acetyl galactosamine transport and metabolism [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=251, Percent_Identity=35.8565737051793, Blast_Score=167, Evalue=7e-43,
Organism=Escherichia coli, GI1789059, Length=248, Percent_Identity=35.0806451612903, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI226510968, Length=240, Percent_Identity=33.3333333333333, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1788069, Length=229, Percent_Identity=33.6244541484716, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789829, Length=231, Percent_Identity=30.3030303030303, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87082344, Length=248, Percent_Identity=27.8225806451613, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1790753, Length=250, Percent_Identity=26, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1787540, Length=252, Percent_Identity=28.1746031746032, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789170, Length=229, Percent_Identity=27.0742358078603, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787063, Length=239, Percent_Identity=25.1046025104602, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790635, Length=255, Percent_Identity=24.3137254901961, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28975; Mature: 28975

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2 ; PS00579 RIBOSOMAL_L29

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPDESTIGERSPLMLDRRTRIAELVRQRGSVRVNELADIFGVTPVTIRNDLAALEREGV
CCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCEEHHHHHHHHCCCCEEEHHHHHHHHHCCE
LVRDHGGAVALPATSALIAFEQRASIRLEAKARIGAAAAQFVQPGDTILLDAGTTVVEMV
EEEECCCEEEECCHHHHHEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEECCCHHHHHH
KHLRQRTPLTVVTNALNVVIELRHLNDVQVWMLGGTVNYATFGTLGPLVEQSLGDLVVEK
HHHHHCCCHHHHHHHHHHEEEEECCCCEEEEEECCEECCHHHHHHHHHHHHHHHHHHHHH
LFLAAESVDSTYGVTDSTSEIAHTKRALARAARRIILLADSSKWQRRGFIKVLPLEAIET
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCEEEEEECCCCHHHCCCEEEECHHHHHH
IITDTDLPETELRRLEMAGVRVVLV
HHCCCCCCHHHHHHHHHCCEEEEEC
>Mature Secondary Structure
MQPDESTIGERSPLMLDRRTRIAELVRQRGSVRVNELADIFGVTPVTIRNDLAALEREGV
CCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCEEHHHHHHHHCCCCEEEHHHHHHHHHCCE
LVRDHGGAVALPATSALIAFEQRASIRLEAKARIGAAAAQFVQPGDTILLDAGTTVVEMV
EEEECCCEEEECCHHHHHEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEECCCHHHHHH
KHLRQRTPLTVVTNALNVVIELRHLNDVQVWMLGGTVNYATFGTLGPLVEQSLGDLVVEK
HHHHHCCCHHHHHHHHHHEEEEECCCCEEEEEECCEECCHHHHHHHHHHHHHHHHHHHHH
LFLAAESVDSTYGVTDSTSEIAHTKRALARAARRIILLADSSKWQRRGFIKVLPLEAIET
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCEEEEEECCCCHHHCCCEEEECHHHHHH
IITDTDLPETELRRLEMAGVRVVLV
HHCCCCCCHHHHHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]