BacMap

Definition	Chloroflexus sp. Y-400-fl chromosome, complete genome.
Accession	NC_012032
Length	5,268,950

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The map label for this gene is cbpA [H]

Identifier: 222523626

GI number: 222523626

Start: 397380

End: 398306

Strand: Reverse

Name: cbpA [H]

Synonym: Chy400_0332

Alternate gene names: 222523626

Gene position: 398306-397380 (Counterclockwise)

Preceding gene: 222523627

Following gene: 222523625

Centisome position: 7.56

GC content: 60.63

Gene sequence:

>927_bases
ATGGAATTCAAAGATTACTATGCCATCTTAGGACTTAGCCCGGATGCCGATGAGCAGGCCATCAAACAAGCCTATCGCAA
ACTGGCCCGTCAATATCATCCTGACGTTAATCCGGGCGATAAGAAGGCCGAAGAGCGGTTCAAAGAGATAAATGAGGCGT
ATCAGGCGCTGAGCGACCCCGAACGGCGGCGCAAGTACGATGAATTGCGTTCGTATTATCAGCGCTGGCAACGCAGCGGC
GGTCGCGGCGATTTCAATTGGAGCCAGTGGCAGGCTGCACCTGGCCAACAGGTCTATACCTACAATGTCTCGCCGGAAGA
CCTTGAGGACCTGTTTGGTGCCGACAGCCCGTTCTCTGATTTCTTCAGTTCAATTTTCGGTCAGCCCCAGTTCCGGCGTG
CGAGTCGGGCGGCCCGTGGACGCGATCTTGAGGCGCCGGTAACCGTTTCGCTCGAAGAGGCCTTCTCAGGCACAACCCGC
TCGCTGCAGGTCGGTGACCGCCGGATCGAAGCCCGCATCCCGCGTGGTGTGCGCACAGGTACCCGCGTGCGGTTGAGTGG
TCAGGGGGCACCCGGTATTGGCGGCGGGCCGGACGGCGATCTCTATCTGGTCGTTGAGGTGGCGCCGCATCCGCAATTCG
AGCGTGACGGTGACGATCTGACGACGACCATTGCGGTCGATGCCTTCACTGCGGCGGTAGGTGGCGAAGTGCGGGTGCCA
ACGATTGACGGTTCGGTGACGCTGAAGATACCGCCCCGCACGCAGGCAGATCGTGTGTTCCGTCTGCGTGGCAAAGGGAT
GCCGCGCCTGGAGAATCCCGCCGAGCGCGGTGATCTCTTTGCCCGCGTGAAGCTGGTGTTGCCGGAGCCGTTGAGTGACG
CGGAGCTGGCTACGTTGCGTGAACTGGTGCGAAAACGCCAGCGCTAG

Upstream 100 bases:

>100_bases
CTCTCCCGGTGTGGTGTAGTGGGCATTATTGCTGCCCGCTACACCTGATTGCCGGTGTTACCCTATCATCACAACATCAT
CGCACGGTGATGAGAAGACT

Downstream 100 bases:

>100_bases
GGAGAGATGCACCACAGAGGCACCGAGAGTACAGAGAGTGATAGCGGATAATCAGGTGGCAACTGAGGTTATACATATCC
TCTGTGTCTCTGTGGTGAGA

Product: chaperone DnaJ domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MEFKDYYAILGLSPDADEQAIKQAYRKLARQYHPDVNPGDKKAEERFKEINEAYQALSDPERRRKYDELRSYYQRWQRSG
GRGDFNWSQWQAAPGQQVYTYNVSPEDLEDLFGADSPFSDFFSSIFGQPQFRRASRAARGRDLEAPVTVSLEEAFSGTTR
SLQVGDRRIEARIPRGVRTGTRVRLSGQGAPGIGGGPDGDLYLVVEVAPHPQFERDGDDLTTTIAVDAFTAAVGGEVRVP
TIDGSVTLKIPPRTQADRVFRLRGKGMPRLENPAERGDLFARVKLVLPEPLSDAELATLRELVRKRQR

Sequences:

>Translated_308_residues
MEFKDYYAILGLSPDADEQAIKQAYRKLARQYHPDVNPGDKKAEERFKEINEAYQALSDPERRRKYDELRSYYQRWQRSG
GRGDFNWSQWQAAPGQQVYTYNVSPEDLEDLFGADSPFSDFFSSIFGQPQFRRASRAARGRDLEAPVTVSLEEAFSGTTR
SLQVGDRRIEARIPRGVRTGTRVRLSGQGAPGIGGGPDGDLYLVVEVAPHPQFERDGDDLTTTIAVDAFTAAVGGEVRVP
TIDGSVTLKIPPRTQADRVFRLRGKGMPRLENPAERGDLFARVKLVLPEPLSDAELATLRELVRKRQR
>Mature_308_residues
MEFKDYYAILGLSPDADEQAIKQAYRKLARQYHPDVNPGDKKAEERFKEINEAYQALSDPERRRKYDELRSYYQRWQRSG
GRGDFNWSQWQAAPGQQVYTYNVSPEDLEDLFGADSPFSDFFSSIFGQPQFRRASRAARGRDLEAPVTVSLEEAFSGTTR
SLQVGDRRIEARIPRGVRTGTRVRLSGQGAPGIGGGPDGDLYLVVEVAPHPQFERDGDDLTTTIAVDAFTAAVGGEVRVP
TIDGSVTLKIPPRTQADRVFRLRGKGMPRLENPAERGDLFARVKLVLPEPLSDAELATLRELVRKRQR

Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI201862587, Length=352, Percent_Identity=30.6818181818182, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI56549115, Length=352, Percent_Identity=30.6818181818182, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI201862518, Length=352, Percent_Identity=30.6818181818182, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI6631085, Length=334, Percent_Identity=29.940119760479, Blast_Score=133, Evalue=2e-31,
Organism=Homo sapiens, GI39204547, Length=320, Percent_Identity=27.8125, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI205360838, Length=341, Percent_Identity=29.0322580645161, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI5453690, Length=348, Percent_Identity=29.0229885057471, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI205360840, Length=340, Percent_Identity=29.1176470588235, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI7706495, Length=331, Percent_Identity=27.4924471299094, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI4504511, Length=201, Percent_Identity=31.3432835820896, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI194306642, Length=114, Percent_Identity=41.2280701754386, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI194306640, Length=114, Percent_Identity=41.2280701754386, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI23503241, Length=125, Percent_Identity=40.8, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI47777312, Length=116, Percent_Identity=37.9310344827586, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI72534740, Length=142, Percent_Identity=34.5070422535211, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI27151736, Length=124, Percent_Identity=38.7096774193548, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI194328760, Length=157, Percent_Identity=33.7579617834395, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI88501736, Length=124, Percent_Identity=38.7096774193548, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI194328758, Length=157, Percent_Identity=33.7579617834395, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI5031741, Length=158, Percent_Identity=34.8101265822785, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI9558755, Length=128, Percent_Identity=38.28125, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI4885495, Length=65, Percent_Identity=50.7692307692308, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI29126218, Length=65, Percent_Identity=50.7692307692308, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI17388799, Length=65, Percent_Identity=50.7692307692308, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI45504382, Length=65, Percent_Identity=47.6923076923077, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI24308127, Length=65, Percent_Identity=44.6153846153846, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI21553335, Length=65, Percent_Identity=50.7692307692308, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI22749377, Length=67, Percent_Identity=49.2537313432836, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787235, Length=318, Percent_Identity=42.1383647798742, Blast_Score=210, Evalue=1e-55,
Organism=Escherichia coli, GI1786197, Length=136, Percent_Identity=44.1176470588235, Blast_Score=122, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI17534355, Length=339, Percent_Identity=27.7286135693215, Blast_Score=120, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI17554644, Length=63, Percent_Identity=55.5555555555556, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17553096, Length=64, Percent_Identity=51.5625, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17553098, Length=64, Percent_Identity=51.5625, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI212645553, Length=64, Percent_Identity=48.4375, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115532378, Length=88, Percent_Identity=39.7727272727273, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17507263, Length=63, Percent_Identity=47.6190476190476, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17568643, Length=64, Percent_Identity=53.125, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17563890, Length=63, Percent_Identity=53.968253968254, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17554900, Length=68, Percent_Identity=42.6470588235294, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324321, Length=346, Percent_Identity=29.7687861271676, Blast_Score=118, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6323870, Length=66, Percent_Identity=51.5151515151515, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6324265, Length=189, Percent_Identity=30.6878306878307, Blast_Score=76, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6322388, Length=73, Percent_Identity=47.945205479452, Blast_Score=70, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6322194, Length=63, Percent_Identity=53.968253968254, Blast_Score=70, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6320888, Length=65, Percent_Identity=49.2307692307692, Blast_Score=68, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6323119, Length=64, Percent_Identity=51.5625, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI85726398, Length=361, Percent_Identity=29.0858725761773, Blast_Score=130, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24658562, Length=340, Percent_Identity=29.1176470588235, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24658555, Length=340, Percent_Identity=29.1176470588235, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI19920464, Length=334, Percent_Identity=26.6467065868263, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI18858081, Length=349, Percent_Identity=27.2206303724928, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI24646562, Length=357, Percent_Identity=26.6106442577031, Blast_Score=98, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24646560, Length=357, Percent_Identity=26.6106442577031, Blast_Score=98, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24646558, Length=357, Percent_Identity=26.6106442577031, Blast_Score=98, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24646556, Length=357, Percent_Identity=26.6106442577031, Blast_Score=98, Evalue=9e-21,
Organism=Drosophila melanogaster, GI21357547, Length=357, Percent_Identity=26.6106442577031, Blast_Score=98, Evalue=9e-21,
Organism=Drosophila melanogaster, GI45552813, Length=64, Percent_Identity=51.5625, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI45549272, Length=64, Percent_Identity=51.5625, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24654066, Length=133, Percent_Identity=36.0902255639098, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24654070, Length=133, Percent_Identity=36.0902255639098, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24654068, Length=133, Percent_Identity=36.0902255639098, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24654072, Length=133, Percent_Identity=36.0902255639098, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI45552811, Length=64, Percent_Identity=51.5625, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI20129487, Length=67, Percent_Identity=50.7462686567164, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24584014, Length=67, Percent_Identity=50.7462686567164, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=51.5625, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24651439, Length=87, Percent_Identity=37.9310344827586, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24651436, Length=78, Percent_Identity=39.7435897435897, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21358311, Length=78, Percent_Identity=39.7435897435897, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI17737735, Length=65, Percent_Identity=49.2307692307692, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI28574723, Length=65, Percent_Identity=49.2307692307692, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24668523, Length=65, Percent_Identity=49.2307692307692, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 34649; Mature: 34649

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFKDYYAILGLSPDADEQAIKQAYRKLARQYHPDVNPGDKKAEERFKEINEAYQALSDP
CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCH
ERRRKYDELRSYYQRWQRSGGRGDFNWSQWQAAPGQQVYTYNVSPEDLEDLFGADSPFSD
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCHHH
FFSSIFGQPQFRRASRAARGRDLEAPVTVSLEEAFSGTTRSLQVGDRRIEARIPRGVRTG
HHHHHHCCHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCCEEHHCCHHHHHHCCCCCCCC
TRVRLSGQGAPGIGGGPDGDLYLVVEVAPHPQFERDGDDLTTTIAVDAFTAAVGGEVRVP
CEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHCCCCEEEE
TIDGSVTLKIPPRTQADRVFRLRGKGMPRLENPAERGDLFARVKLVLPEPLSDAELATLR
EECCEEEEEECCCCCHHHHHHCCCCCCCCCCCCHHHCCCEEEEEEECCCCCCCHHHHHHH
ELVRKRQR
HHHHHHCC
>Mature Secondary Structure
MEFKDYYAILGLSPDADEQAIKQAYRKLARQYHPDVNPGDKKAEERFKEINEAYQALSDP
CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCH
ERRRKYDELRSYYQRWQRSGGRGDFNWSQWQAAPGQQVYTYNVSPEDLEDLFGADSPFSD
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCHHH
FFSSIFGQPQFRRASRAARGRDLEAPVTVSLEEAFSGTTRSLQVGDRRIEARIPRGVRTG
HHHHHHCCHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCCEEHHCCHHHHHHCCCCCCCC
TRVRLSGQGAPGIGGGPDGDLYLVVEVAPHPQFERDGDDLTTTIAVDAFTAAVGGEVRVP
CEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHCCCCEEEE
TIDGSVTLKIPPRTQADRVFRLRGKGMPRLENPAERGDLFARVKLVLPEPLSDAELATLR
EECCEEEEEECCCCCHHHHHHCCCCCCCCCCCCHHHCCCEEEEEEECCCCCCCHHHHHHH
ELVRKRQR
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA