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The map label for this gene is ygcB [C]

Identifier: 222523373

GI number: 222523373

Start: 81371

End: 83776

Strand: Reverse

Name: ygcB [C]

Synonym: Chy400_0074

Alternate gene names: 222523373

Gene position: 83776-81371 (Counterclockwise)

Preceding gene: 222523374

Following gene: 222523372

Centisome position: 1.59

GC content: 56.48

Gene sequence:

>2406_bases
ATGCAACTCTATCCGTACCAGCAGCGGGTGAAGGATATCATTCTTGCCGGAGAGAATGTTGTGCTTCAGGCGCCAACCGG
AGCCGGCAAGACGCGGGCGGCATTGGTGCCGTTTATTGAGGGATTTTTTGATCGACCAGACACCACGCCCCGCAAATGTC
TCTATGTCACGCCGATGCGGGTGCTGGCGAATCAGTTTTATGCTGAATATCGCGAGCTTGCTGCGCGCTATCAGCGCCTG
CACGGACGCCAGCTCGATGTGCGTATTCAAACCGGTGAGCAGCCGGAAGATCGTCGCTTTGAAGGCGATCTTATCTTCTG
TACCGTGGATCAGTTTCTCAGTAGCTATCTGATGATGCCGTACAGTTTGCCGTATCGCCTCGCAAATGTTAATGCAGGCG
CGCTTGCTGGTGCGTATCTGGTCTTTGATGAGTTTCATTTGTTTGATCCTGATGCAGCATTACCCACAATCCTCCACGTC
CTGCGGCAGCTTCATGGCCTGGCCCCGTTTATGCTGATGACGGCGACGTTTAGCAGTGCAATGTTGCAATCACTGGCGAC
GTTGTTGCAGCCGGCACAGGTGGTTACGCTGTCGGCGGCAGAGATTGCAGCGATTAACACCCGTGGTGGTCAACCGGCCC
GGCAGCGGGTGTGGCAGGTGGCCGATCAGCCGTTGCAGGCTGCGGCAGTGCTTGCCCATCATCAGCACGCTTCGCTGGTG
ATTTGCAACACGGTCCGGCGGGCGCGCGAGGTCTATGCTGAACTGAAACAGCAGGCGCCGCCGGAAACTGAGGTCCTTCT
CCTCCATAGTCAGTTCTTACCCGATGACCGTCGTCAGATCGAGGCAAAGTTGCGGAGTCGGCTTGGTGTGTCCTCCCAGC
GCCAGCAGGCCAATCTGATCGTTGTGGCCACTCAGGTCGTTGAAGTAGGGGTTGATATTTCGGTAGAGGTGCTGCATACC
GAACTGGCGCCCCCGGCCAGCCTCATTCAGCGTGCCGGACGTTGTGCGCGCTATCCTGGTGATACCGGCACAGTTATCGT
GTATCCGGTTGAAACATATGTCCCTTATGCGTTCAAACCAGACGAGATCCTCAAGCACGAGATGGATGCGACTCTGGCGT
GGCTGAAGGAACGACAGGGCGCAGTGTTTGACTTCGACCACGAACAGGAGCTGGTCAATGCCGTGAGTGCTGCTCGCGAC
CAAAACATTATTGCAGGTATTCAGGCTGACCGTCACAATCGACGCGCGTCTATTCAGGGTTGTCTTGAGGGACAGCGTGC
GGGAGCGTCACGCCTGCTGGTGCGCGATGTCGATAGCCGCCTGGTACTGATCCATCCCGATCCCGATCAGCTTCTGGCTT
CGCCCTACGATGCGGTTGGTCTGAATATCCCGCTCTATTCGTTGCGGAGTATGGGAAAAGATTGGTTGCAGCGTCCAACT
GATGCTCCCTGGCGCGTGCGCCGGCTCGATGAAAGCGATGCCGGCGATCAGGCAGAGAGTAATCGCCCGCTGTACCGTTG
GGTTGACGTTCACGATAGCAAGGAACTGGCGCAAAGTGCGATTATTGTTGTTCACCCGGCATTAGCCGGCTACTCGGCGC
ACGAAGGCTTTTCACCGGAAACCGGTAATCTACCGTTTATCTCGACGTTGCCGCCAGCCAGGCCATTGATCGACCGGCCT
CGCTCAAGCCTGTACGTTGAGACCTATGCCGAGCATATCCAGCGCGTGCTTGACGCATTTCAGGAACTGGTGCTCCCGGA
ACTCCGCTTTGCCGCATCTGCACTTGAATGTGCTGCCGGGTGGTCGCCTGGCAGTGTGCTGCGCGCTGCGTGGCTGGCAT
GCCTGTTCCACGATGTTGGCAAACTGTCTAAGGGCTGGCAGCAGTGGGCGCATGCCTATCAGCAAGCCATTGGTCAGCCG
GTTGCCAAAACGATTGCGCTGGCCCATACCACGTTTGATTTCCAAAATCCCACCCATCGCCAGGCCGAGCGAGAGGTGTC
ACGTAGCACGCCTCGACCACGCCATGCCGCGGAAGGAGCACTGGCAGTTGCACAGATATTGGCCGGTGCGTTCAACATAT
CTCATGAGAAGGAATTGGTACAGGCAATACTGACTGCGATTGCCCGTCATCATGCCCCCTTCGTTCAGGATTGTCAGGCA
TTTTCGTTGGTGTCAGAGGCAGGCAATCTGATTCAAAATACGCTACAATTCCTGCCAGAAGAGGTAAACTATTCTCTCAA
TATCAACGACTTATGGGTGAATAGTCATCATCACCAGCAATTTGCCGAATTGCTGATCAAGCCAACCAGCCGCTACGGTT
GGATTGCCTACACATTACTGGCTCGTGCCTTACGACGGGCCGATCAGCGGGGCACGGAGATGGGCGCCGGGCAAACGCTT
CCCTGA

Upstream 100 bases:

>100_bases
AGAAGCGCGAGCGTTGGCCGAACGGTATGGCTGGCACGTTTCCTCGGTACCGACACCGACCGGCTCGACGACGCTACACG
ATTTCTTTGGAGGGTAAGAT

Downstream 100 bases:

>100_bases
GCAGTGGAGTATCTATGAATGCGTCAATCTATCGCAGTAAGTATTACGTTGAAAAGCGCACCGGTACCTTTGCCGATAAC
CTGGTTGCGTTTGGATTGGC

Product: CRISPR-associated helicase Cas3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 801; Mature: 801

Protein sequence:

>801_residues
MQLYPYQQRVKDIILAGENVVLQAPTGAGKTRAALVPFIEGFFDRPDTTPRKCLYVTPMRVLANQFYAEYRELAARYQRL
HGRQLDVRIQTGEQPEDRRFEGDLIFCTVDQFLSSYLMMPYSLPYRLANVNAGALAGAYLVFDEFHLFDPDAALPTILHV
LRQLHGLAPFMLMTATFSSAMLQSLATLLQPAQVVTLSAAEIAAINTRGGQPARQRVWQVADQPLQAAAVLAHHQHASLV
ICNTVRRAREVYAELKQQAPPETEVLLLHSQFLPDDRRQIEAKLRSRLGVSSQRQQANLIVVATQVVEVGVDISVEVLHT
ELAPPASLIQRAGRCARYPGDTGTVIVYPVETYVPYAFKPDEILKHEMDATLAWLKERQGAVFDFDHEQELVNAVSAARD
QNIIAGIQADRHNRRASIQGCLEGQRAGASRLLVRDVDSRLVLIHPDPDQLLASPYDAVGLNIPLYSLRSMGKDWLQRPT
DAPWRVRRLDESDAGDQAESNRPLYRWVDVHDSKELAQSAIIVVHPALAGYSAHEGFSPETGNLPFISTLPPARPLIDRP
RSSLYVETYAEHIQRVLDAFQELVLPELRFAASALECAAGWSPGSVLRAAWLACLFHDVGKLSKGWQQWAHAYQQAIGQP
VAKTIALAHTTFDFQNPTHRQAEREVSRSTPRPRHAAEGALAVAQILAGAFNISHEKELVQAILTAIARHHAPFVQDCQA
FSLVSEAGNLIQNTLQFLPEEVNYSLNINDLWVNSHHHQQFAELLIKPTSRYGWIAYTLLARALRRADQRGTEMGAGQTL
P

Sequences:

>Translated_801_residues
MQLYPYQQRVKDIILAGENVVLQAPTGAGKTRAALVPFIEGFFDRPDTTPRKCLYVTPMRVLANQFYAEYRELAARYQRL
HGRQLDVRIQTGEQPEDRRFEGDLIFCTVDQFLSSYLMMPYSLPYRLANVNAGALAGAYLVFDEFHLFDPDAALPTILHV
LRQLHGLAPFMLMTATFSSAMLQSLATLLQPAQVVTLSAAEIAAINTRGGQPARQRVWQVADQPLQAAAVLAHHQHASLV
ICNTVRRAREVYAELKQQAPPETEVLLLHSQFLPDDRRQIEAKLRSRLGVSSQRQQANLIVVATQVVEVGVDISVEVLHT
ELAPPASLIQRAGRCARYPGDTGTVIVYPVETYVPYAFKPDEILKHEMDATLAWLKERQGAVFDFDHEQELVNAVSAARD
QNIIAGIQADRHNRRASIQGCLEGQRAGASRLLVRDVDSRLVLIHPDPDQLLASPYDAVGLNIPLYSLRSMGKDWLQRPT
DAPWRVRRLDESDAGDQAESNRPLYRWVDVHDSKELAQSAIIVVHPALAGYSAHEGFSPETGNLPFISTLPPARPLIDRP
RSSLYVETYAEHIQRVLDAFQELVLPELRFAASALECAAGWSPGSVLRAAWLACLFHDVGKLSKGWQQWAHAYQQAIGQP
VAKTIALAHTTFDFQNPTHRQAEREVSRSTPRPRHAAEGALAVAQILAGAFNISHEKELVQAILTAIARHHAPFVQDCQA
FSLVSEAGNLIQNTLQFLPEEVNYSLNINDLWVNSHHHQQFAELLIKPTSRYGWIAYTLLARALRRADQRGTEMGAGQTL
P
>Mature_801_residues
MQLYPYQQRVKDIILAGENVVLQAPTGAGKTRAALVPFIEGFFDRPDTTPRKCLYVTPMRVLANQFYAEYRELAARYQRL
HGRQLDVRIQTGEQPEDRRFEGDLIFCTVDQFLSSYLMMPYSLPYRLANVNAGALAGAYLVFDEFHLFDPDAALPTILHV
LRQLHGLAPFMLMTATFSSAMLQSLATLLQPAQVVTLSAAEIAAINTRGGQPARQRVWQVADQPLQAAAVLAHHQHASLV
ICNTVRRAREVYAELKQQAPPETEVLLLHSQFLPDDRRQIEAKLRSRLGVSSQRQQANLIVVATQVVEVGVDISVEVLHT
ELAPPASLIQRAGRCARYPGDTGTVIVYPVETYVPYAFKPDEILKHEMDATLAWLKERQGAVFDFDHEQELVNAVSAARD
QNIIAGIQADRHNRRASIQGCLEGQRAGASRLLVRDVDSRLVLIHPDPDQLLASPYDAVGLNIPLYSLRSMGKDWLQRPT
DAPWRVRRLDESDAGDQAESNRPLYRWVDVHDSKELAQSAIIVVHPALAGYSAHEGFSPETGNLPFISTLPPARPLIDRP
RSSLYVETYAEHIQRVLDAFQELVLPELRFAASALECAAGWSPGSVLRAAWLACLFHDVGKLSKGWQQWAHAYQQAIGQP
VAKTIALAHTTFDFQNPTHRQAEREVSRSTPRPRHAAEGALAVAQILAGAFNISHEKELVQAILTAIARHHAPFVQDCQA
FSLVSEAGNLIQNTLQFLPEEVNYSLNINDLWVNSHHHQQFAELLIKPTSRYGWIAYTLLARALRRADQRGTEMGAGQTL
P

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 89348; Mature: 89348

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLYPYQQRVKDIILAGENVVLQAPTGAGKTRAALVPFIEGFFDRPDTTPRKCLYVTPMR
CCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECHHH
VLANQFYAEYRELAARYQRLHGRQLDVRIQTGEQPEDRRFEGDLIFCTVDQFLSSYLMMP
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHCCC
YSLPYRLANVNAGALAGAYLVFDEFHLFDPDAALPTILHVLRQLHGLAPFMLMTATFSSA
CCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
MLQSLATLLQPAQVVTLSAAEIAAINTRGGQPARQRVWQVADQPLQAAAVLAHHQHASLV
HHHHHHHHHCCCHHEEEEHHHEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCEE
ICNTVRRAREVYAELKQQAPPETEVLLLHSQFLPDDRRQIEAKLRSRLGVSSQRQQANLI
HHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEE
VVATQVVEVGVDISVEVLHTELAPPASLIQRAGRCARYPGDTGTVIVYPVETYVPYAFKP
EEEEHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCEEEEEHHHCCCCCCCH
DEILKHEMDATLAWLKERQGAVFDFDHEQELVNAVSAARDQNIIAGIQADRHNRRASIQG
HHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH
CLEGQRAGASRLLVRDVDSRLVLIHPDPDQLLASPYDAVGLNIPLYSLRSMGKDWLQRPT
HHHHHHCCCHHHHEEECCCCEEEECCCHHHHHCCCCCCCCCCCHHHHHHHCCHHHHCCCC
DAPWRVRRLDESDAGDQAESNRPLYRWVDVHDSKELAQSAIIVVHPALAGYSAHEGFSPE
CCCHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHCEEEEEECHHHCCCCCCCCCCC
TGNLPFISTLPPARPLIDRPRSSLYVETYAEHIQRVLDAFQELVLPELRFAASALECAAG
CCCCCEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WSPGSVLRAAWLACLFHDVGKLSKGWQQWAHAYQQAIGQPVAKTIALAHTTFDFQNPTHR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEECCCCCHHH
QAEREVSRSTPRPRHAAEGALAVAQILAGAFNISHEKELVQAILTAIARHHAPFVQDCQA
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
FSLVSEAGNLIQNTLQFLPEEVNYSLNINDLWVNSHHHQQFAELLIKPTSRYGWIAYTLL
HHHHHHHHHHHHHHHHHCHHHCCCEECEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHH
ARALRRADQRGTEMGAGQTLP
HHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MQLYPYQQRVKDIILAGENVVLQAPTGAGKTRAALVPFIEGFFDRPDTTPRKCLYVTPMR
CCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECHHH
VLANQFYAEYRELAARYQRLHGRQLDVRIQTGEQPEDRRFEGDLIFCTVDQFLSSYLMMP
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHCCC
YSLPYRLANVNAGALAGAYLVFDEFHLFDPDAALPTILHVLRQLHGLAPFMLMTATFSSA
CCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
MLQSLATLLQPAQVVTLSAAEIAAINTRGGQPARQRVWQVADQPLQAAAVLAHHQHASLV
HHHHHHHHHCCCHHEEEEHHHEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCEE
ICNTVRRAREVYAELKQQAPPETEVLLLHSQFLPDDRRQIEAKLRSRLGVSSQRQQANLI
HHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEE
VVATQVVEVGVDISVEVLHTELAPPASLIQRAGRCARYPGDTGTVIVYPVETYVPYAFKP
EEEEHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCEEEEEHHHCCCCCCCH
DEILKHEMDATLAWLKERQGAVFDFDHEQELVNAVSAARDQNIIAGIQADRHNRRASIQG
HHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH
CLEGQRAGASRLLVRDVDSRLVLIHPDPDQLLASPYDAVGLNIPLYSLRSMGKDWLQRPT
HHHHHHCCCHHHHEEECCCCEEEECCCHHHHHCCCCCCCCCCCHHHHHHHCCHHHHCCCC
DAPWRVRRLDESDAGDQAESNRPLYRWVDVHDSKELAQSAIIVVHPALAGYSAHEGFSPE
CCCHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHCEEEEEECHHHCCCCCCCCCCC
TGNLPFISTLPPARPLIDRPRSSLYVETYAEHIQRVLDAFQELVLPELRFAASALECAAG
CCCCCEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WSPGSVLRAAWLACLFHDVGKLSKGWQQWAHAYQQAIGQPVAKTIALAHTTFDFQNPTHR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEECCCCCHHH
QAEREVSRSTPRPRHAAEGALAVAQILAGAFNISHEKELVQAILTAIARHHAPFVQDCQA
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
FSLVSEAGNLIQNTLQFLPEEVNYSLNINDLWVNSHHHQQFAELLIKPTSRYGWIAYTLL
HHHHHHHHHHHHHHHHHCHHHCCCEECEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHH
ARALRRADQRGTEMGAGQTLP
HHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]