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The map label for this gene is (hspc4-1 [H]

Identifier: 220932297

GI number: 220932297

Start: 1556574

End: 1557005

Strand: Direct

Name: (hspc4-1 [H]

Synonym: Hore_14610

Alternate gene names: 220932297

Gene position: 1556574-1557005 (Clockwise)

Preceding gene: 220932296

Following gene: 220932309

Centisome position: 60.38

GC content: 38.43

Gene sequence:

>432_bases
ATGAGGCGATACCCTCTGGAAAGGCATCCCTTTAGTGAAGTTAACTCTCTCAGGGACCAGATGGACCGTTTTTTTGAAAA
TCTCCCCTATGAAAATTTTATGAATTTTAGACCCTCTATTGATGTCTTTGAAAAGGATGGAAATGTTATTGTCGAAGCCG
ATATCCCGGGAATTAACCCTGACGACATTGAAATTGCCATAAGTGAAGACCGCTTAAATATCAAAGGAAAAGTAGAAAAA
AATGAAGAAGTTAAAGAAGATAACTATTACCGGACAGAAAGACAGTTCGGCAGTTTTAATAGAAATATAAATCTGCCAGC
CCGGGTTAACCATAAAAAAGCTGAAGCCCGGGTCAACAATGGCGTACTTAAAATAAAGATACCCAAAATGGAACACGAAT
CAGAAAAAATCACTCGCTTACGCCCTCATTAA

Upstream 100 bases:

>100_bases
AATAATAATACCAAAAAGCAACAGTAATGATAAACCATTTTAAAGAATATTTAAAACAGACATGGGGATGCTATAACAAA
AGGATAAAAGGAGGCAAAAC

Downstream 100 bases:

>100_bases
TTTATGCCTAATACGGTTTTGCCGATAAATCAGTTCCTCGCGTTTTTCATTGTTTAAAGTTAAAGCTCTATATTTGTTTA
AATAAGCCAGGGCCTGTTCA

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MRRYPLERHPFSEVNSLRDQMDRFFENLPYENFMNFRPSIDVFEKDGNVIVEADIPGINPDDIEIAISEDRLNIKGKVEK
NEEVKEDNYYRTERQFGSFNRNINLPARVNHKKAEARVNNGVLKIKIPKMEHESEKITRLRPH

Sequences:

>Translated_143_residues
MRRYPLERHPFSEVNSLRDQMDRFFENLPYENFMNFRPSIDVFEKDGNVIVEADIPGINPDDIEIAISEDRLNIKGKVEK
NEEVKEDNYYRTERQFGSFNRNINLPARVNHKKAEARVNNGVLKIKIPKMEHESEKITRLRPH
>Mature_143_residues
MRRYPLERHPFSEVNSLRDQMDRFFENLPYENFMNFRPSIDVFEKDGNVIVEADIPGINPDDIEIAISEDRLNIKGKVEK
NEEVKEDNYYRTERQFGSFNRNINLPARVNHKKAEARVNNGVLKIKIPKMEHESEKITRLRPH

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 16998; Mature: 16998

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRYPLERHPFSEVNSLRDQMDRFFENLPYENFMNFRPSIDVFEKDGNVIVEADIPGINP
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCEEEEECCCCCCC
DDIEIAISEDRLNIKGKVEKNEEVKEDNYYRTERQFGSFNRNINLPARVNHKKAEARVNN
CCEEEEEECCCEEEEEECCCCCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCHHHHHHHCC
GVLKIKIPKMEHESEKITRLRPH
CEEEEEECCCCCCCHHHHCCCCC
>Mature Secondary Structure
MRRYPLERHPFSEVNSLRDQMDRFFENLPYENFMNFRPSIDVFEKDGNVIVEADIPGINP
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCEEEEECCCCCCC
DDIEIAISEDRLNIKGKVEKNEEVKEDNYYRTERQFGSFNRNINLPARVNHKKAEARVNN
CCEEEEEECCCEEEEEECCCCCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCHHHHHHHCC
GVLKIKIPKMEHESEKITRLRPH
CEEEEEECCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA